Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq208208 132 6e-26 seq243809 125 8e-24 seq207449 107 2e-18 seq162102 105 8e-18 seq39436 91.5 2e-13 seq178632 86.0 7e-12 >seq208208 Length=133897 Score = 132 bits (146), Expect = 6e-26 Identities = 254/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 37809 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 37750 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 37749 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCCGTCAATAGTTGGTTC 37692 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| |||||||||| || | | | | |||| | | |||| || | Sbjct 37691 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 37634 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 37633 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAA 37574 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 ||||||| || | ||| || ||||||||||||||||| ||||| | || | ||| Sbjct 37573 GATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA- 37515 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || || || || || Sbjct 37514 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCA 37455 Query 9549 GTACCTGG 9556 ||||| || Sbjct 37454 GTACCAGG 37447 >seq243809 Length=169429 Score = 125 bits (138), Expect = 8e-24 Identities = 198/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 |||||||||||| || ||||| ||||| |||||||| || || | ||||||||| | Sbjct 56241 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 56184 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || |||| | ||| ||||||| ||||||||||||||||| || ||||| Sbjct 56183 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 56124 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | || || | ||| | || || || || ||||| Sbjct 56123 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 56065 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 |||||||| ||| ||||| | || || | |||| || || || ||| || |||||| Sbjct 56064 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 56005 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| |||| || | ||| ||||| || ||||| || Sbjct 56004 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 55966 >seq207449 Length=20620 Score = 107 bits (118), Expect = 2e-18 Identities = 195/282 (69%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| |||||||| || || |||||||| || || | |||||||| | Sbjct 9401 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 9456 Query 9342 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||| ||| || |||| |||| |||| || ||||||||||||||||| || ||| Sbjct 9457 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 9514 Query 9396 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 ||||| || | ||| | || | ||||| | ||| | || || || ||||| Sbjct 9515 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 9573 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||| ||||||| ||| ||||| | || || | |||| || || || ||| | || Sbjct 9574 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTC 9633 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| || | |||| || | ||| |||||||| ||||| || Sbjct 9634 ACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 9675 >seq162102 Length=94307 Score = 105 bits (116), Expect = 8e-18 Identities = 195/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || ||||| | || | |||||| || ||| | ||| || || || Sbjct 31633 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31574 Query 9254 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 ||||||| | || |||||| | |||||||||||| || || | |||||||||| Sbjct 31573 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTA 31516 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || || || | ||||||||| | | ||||| | | |||| | || || Sbjct 31515 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 31456 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||||||||||||||| ||||| | ||| ||| ||||| || | | || | Sbjct 31455 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 31396 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || | ||| || || |||||||||||||||||||| || || Sbjct 31395 TCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 31352 >seq39436 Length=99557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136169 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 136228 ||| |||||||||| | |||||||||||||||||||||| |||| ||||||||||| ||| Sbjct 30694 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACGACCCGGGTTCAAATCCCGGT 30635 Query 136229 AGGAGCTT 136236 |||| ||| Sbjct 30634 AGGACCTT 30627 >seq178632 Length=191222 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||| ||||| || ||| | |||| Sbjct 180474 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCACACAGCAGTTTCAGTTGGACTTGTG 180415 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| || ||||||||||| || ||| || || || | ||||| |||||| Sbjct 180414 TACTCAATAATCTCAGTACACAAGTTAGACGACTTGATAGTGCCAAGATTCTGCTGGTTA 180355 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 180354 CTTTTTCTATTGCAAGTATCCT 180333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588108215690320