Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq157592 136 3e-27 seq242921 102 5e-17 seq140002 100 2e-16 seq28647 98.7 6e-16 seq182928 93.3 3e-14 seq224189 89.7 3e-13 seq196472 89.7 3e-13 seq72314 86.0 4e-12 seq184254 82.4 5e-11 seq24881 82.4 5e-11 >seq157592 Length=32097 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| |||||||| | ||| || ||||||||||| ||||||| Sbjct 24195 TTCCTCCCCTCAGCCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCG 24254 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| |||| ||| ||||| ||||| || || | ||||||||| | | Sbjct 24255 CAAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGG 24314 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||||||||| ||||| |||||| | || | ||| |||| Sbjct 24315 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAA 24374 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| ||||| ||||| || || || || ||||||||| Sbjct 24375 CCTCCAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACGAAAATCTGCATA 24424 >seq242921 Length=127737 Score = 102 bits (112), Expect = 5e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||||||||| ||||| | ||| ||||| |||| || ||||| Sbjct 49310 GTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGAGTTCGTCCATCCTCAAGCTG 49251 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || | | ||||||||| | || | || |||||||| ||||| Sbjct 49250 CTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 49191 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | || || | || | ||| | |||||| || | ||| ||||| || || || Sbjct 49190 CGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGT 49131 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | ||| ||||||||||||||||| Sbjct 49130 CAAAGTTTTCACAAAGATCTGCAT 49107 Score = 98.7 bits (108), Expect = 6e-16 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||||||| |||||||| || | |||| | || |||| |||||||| Sbjct 50222 GTGAAGGGTGGATTCTTTCTGGATGTTATAATCTGCAAGGGTACGACCATCCTCCAGCTG 50163 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || ||||| || || | ||||| ||| | || | ||||||||||| |||||| Sbjct 50162 CTTACCAGCAAAAATCAGCCTCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCTT 50103 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 ||| || || |||| || || | ||| || || | || ||||| || | Sbjct 50102 TGCTTTCAC--AT--TATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTCC 50047 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||| |||||||| Sbjct 50046 CAGTTAGAGTCTTGACAAAAATCTGCAT 50019 >seq140002 Length=100703 Score = 100 bits (110), Expect = 2e-16 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || |||||||||||||||||| || | |||| | || |||| || Sbjct 56454 AACCAGGTGAAGAGTTGATTCTTTCTGAATGTTATAATCAGCAAGGGTACGACCATCCTC 56395 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || | ||||||||| | || | |||||||| || Sbjct 56394 CAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATACCCTCCTTATCCTG 56335 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGG 34947 |||||| || || || | || || | ||| || |||||| || | ||| || | Sbjct 56334 AATCTTTGCCTTCAC--AT--TGTCAATGGTATCCGAGCTCTCAACCTCCAAGGTGATCG 56279 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || | |||||| ||||| |||||||| Sbjct 56278 TCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 56245 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | | ||||| || | |||| |||||||| ||||| || || | | Sbjct 56243 CCTCCTCTCAAGCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 56184 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || ||||| || || ||||| |||| | |||||||| | || Sbjct 56183 AGAGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAAATTAACCTCTGCTGGTCAGGTGGG 56124 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||| ||||| || ||| || ||||| || ||||||| ||| ||| Sbjct 56123 ATCCCTTCCTTATCTTGAATTTTAGCCTTGAC--AT--TATCGATGGTGTCAGAACTCTC 56068 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| || ||||| || || || ||||||||||||||||||||| Sbjct 56067 AACCTCAAGGGTGATAGTTTTCCCTGTCAGTGTCTTCACAAAGATCTGCATA 56016 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| ||||| |||| || | ||| ||| |||||||| || ||||| | | Sbjct 55787 CCACCCCTCAGCCTCAGCACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 55728 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || || || ||||| ||||| || | | ||||| ||| | || Sbjct 55727 AGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGAGGA 55668 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || || || |||||| | || | ||| |||||| Sbjct 55667 ATGCCTTCTTTATCCTGGATTTTAGCTTTGACATTGTCAATTGTATCAGAACTCTCAACC 55608 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| || || ||||| || | ||| || ||||||||||||||| Sbjct 55607 TCAAGGGTAATAGTCTTTCCTGTCAAAGTTTTTACAAAGATCTGCATA 55560 >seq28647 Length=54725 Score = 98.7 bits (108), Expect = 6e-16 Identities = 146/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| |||||||||||||| || | ||| |||| |||| || | Sbjct 9662 CAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGCAAGTGTTCGACCATCTTCGA 9603 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 | |||||||| ||| | |||| | ||| |||||| | || | || |||||||| || Sbjct 9602 GTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAA 9543 Query 34894 TCTTCTGTTTGACGGATG-CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||| ||||| | || | || | || | |||||| |||| |||||||| ||| Sbjct 9542 TCTT-TGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAACTTCGAGTGTTATGGTCTTT 9484 Query 34953 CCCGTGAGAGTCTTCACAAAGAT 34975 || || || ||||| || ||||| Sbjct 9483 CCAGTAAGGGTCTTGACGAAGAT 9461 >seq182928 Length=15200 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| | ||| |||| |||| || ||||||||||||||||| Sbjct 4342 TCCTTTTGGATGTTGTAGTCAGCAAGAGTTCGGCCATCTTCAAGCTGTTTTCCGGCAAAG 4283 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| |||||| |||||| Sbjct 4282 ATCAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 4223 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| |||||| || | | || || ||||| ||||| ||||| ||| Sbjct 4222 TCAATGGTGTCAAAACTCTCAACCTCAAGATTAATAGTCTTTCCGGTGAGTGTCTTAACA 4163 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 4162 AAGATCTGCAT 4152 Score = 82.4 bits (90), Expect = 5e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 ||||||||||||| ||| | | | || |||| |||||| || ||||| || | || Sbjct 5015 ATGTTATAGTCCGTAAGAGTCCTGCCGTCCTCCAACTGTTTACCAGCAAAGATCAAACGC 4956 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT 34919 | ||||||| |||| | ||||||||||| ||||| |||||| || | | | Sbjct 4955 TACTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTTGCTTTGAC-ATTGTCAATGGT 4897 Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 ||| |||||| || | ||||| || || || || | |||||| ||||| |||||| Sbjct 4896 TCAGAACTCTCAACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGC 4837 Query 34980 AT 34981 || Sbjct 4836 AT 4835 >seq224189 Length=50442 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || ||||| ||||| || || | || |||| |||| || Sbjct 16419 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCCTCG 16478 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || || || |||||||| | || | || |||||||| Sbjct 16479 AGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGG 16538 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || || || || | ||| ||||| || Sbjct 16539 ATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTA 16598 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 ||||| || || ||||| ||||||||||| |||| Sbjct 16599 CCCGTCAGGGTTTTCACGAAGATCTGCATCTTCG 16632 >seq196472 Length=12654 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||||||| | ||| | ||||| ||| ||| ||||| |||||||| || | Sbjct 8154 CCACCCCTCAACCTGAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 8095 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||||| |||| || | || || || ||||| || || | ||||| || | || Sbjct 8094 AGAGTTCGTCCATCTTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGG 8035 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||| || || || |||||| || | |||||| Sbjct 8034 ATACCCTCCTTGTCTTGAATTTTAGCCTTAACATTGTCTATCGTGTCCGAGCTCTCAACT 7975 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || |||||||| || | ||||| ||||| || ||||| Sbjct 7974 TCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAAATTTGCAT 7928 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| || |||| ||| | ||| |||| || || |||||||| ||||| Sbjct 7662 TCCTTTTGAATGTTGTAATCCGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCTGCAAAG 7603 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||| || ||| | || | || || ||||| || ||| ||| || Sbjct 7602 ATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTAACATTG 7543 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || |||||| |||| ||||| || || || || |||||||| ||| Sbjct 7542 TCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACA 7483 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 7482 AAGATCTGCAT 7472 >seq72314 Length=63918 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||||||| | ||| | ||||| ||| ||| ||||| |||||||| || | Sbjct 55228 CCACCCCTCAACCTGAGAACAAGGTGAAGAGTGGATTCCTTCTGGATGTTATAATCAGCC 55169 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| || | || || || ||||| || || | ||||||||| |||| Sbjct 55168 AGAGTTCTTCCATCTTCTAATTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGCGGG 55109 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | || ||||| || || ||| || || || |||| || | ||| || ||| Sbjct 55108 ATACCTTCCTTATCTTGGATTTTCGTCTTAAC--AT--TATCAATTGTGTCCGAGCTCTC 55053 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || |||||||| || || | || || |||||||| ||||| Sbjct 55052 AACTTCCAATGTAATGGTTTTCCCTGTTAAGGTTTTAACAAAGATTTGCAT 55002 >seq184254 Length=183585 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805 ||||| |||||||||| | ||||||||| | ||||| || |||||||||||| || Sbjct 180718 ATCATAGTTCCTCCCCTGAGCCTCAAAACGAGGTGAAGAGTTGATTCTTTCTGAATATTG 180659 Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865 || || | ||| | || |||| |||| |||||| || ||||| || |||| ||||| Sbjct 180658 TAATCAGCCAGGGTCCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGA 180599 Query 34866 TC 34867 || Sbjct 180598 TC 180597 >seq24881 Length=242481 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| || |||| ||||| || || | || |||| |||| || Sbjct 141192 ACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACCATCCTCA 141133 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||||||||| || || || || |||||||| || | || |||||||| Sbjct 141132 AGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTTGTCCTGG 141073 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || || || || | ||| ||||| || Sbjct 141072 ATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTTA 141013 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 ||||| || || ||||| ||||||||||| ||||| Sbjct 141012 CCCGTCAGGGTTTTCACGAAGATCTGCATCTTCGT 140978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323628980542704