Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq118536 102 1e-16 >seq118536 Length=58152 Score = 102 bits (112), Expect = 1e-16 Identities = 361/561 (64%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| || |||||||| || || || || || || || || ||| Sbjct 25438 AAACAAGCGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 25379 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAA 37291 ||||| |||||||| || | ||||| | ||| ||||| || || ||| | ||||| || Sbjct 25378 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAA 25320 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 ||||||||||| || ||||| || || | ||| | || ||| |||| Sbjct 25319 AAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAAC---- 25264 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 || ||||| | | ||| | ||||| | |||||| || || |||| Sbjct 25263 --CATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAAC 25206 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | ||||||| ||| || | || || | || | || | ||| Sbjct 25205 TGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACT 25146 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || ||||| || |||||||| || || || || || || ||| | || || Sbjct 25145 GTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTC 25086 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 | | ||| || || || | ||||| |||| |||||| ||| || || || Sbjct 25085 GGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGA 25026 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || || || || ||||| || | | || ||||| |||||| | | || ||| Sbjct 25025 GGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTC 24966 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | |||| |||||||| ||||| ||| | ||||| ||| || || || Sbjct 24965 CCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGC 24906 Query 37709 ACGTTTATACATCGTCCAAAT 37729 ||| ||||| |||||| Sbjct 24905 TTTTTTGTACATTTCCCAAAT 24885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590436801284720