Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_019929.1
Length=243050
Score E
Sequences producing significant alignments: (Bits) Value
seq253918 86.0 1e-11
seq244742 86.0 1e-11
seq203671 86.0 1e-11
seq80078 86.0 1e-11
seq55291 86.0 1e-11
seq50268 86.0 1e-11
>seq253918
Length=155941
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 32009 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 31951
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 31950 CCCCGTCAGTCC 31939
>seq244742
Length=136787
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 64180 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 64238
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 64239 CCCCGTCAGTCC 64250
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 73683 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 73741
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 73742 CCCCGTCAGTCC 73753
>seq203671
Length=8216
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 2543 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 2485
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 2484 CCCCGTCAGTCC 2473
>seq80078
Length=4039
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 3503 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 3445
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 3444 CCCCGTCAGTCC 3433
>seq55291
Length=139015
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 35724 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 35666
Query 169788 CCCCGTCAGTCC 169799
||||||||||||
Sbjct 35665 CCCCGTCAGTCC 35654
>seq50268
Length=32570
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787
||||||||| ||| | |||| |||| ||||||||||| |||||| | |||||||||||
Sbjct 16039 GGATTGTAGTTCAATCGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 16097
Query 169788 CCCCGTCAGTCCTGCCATTTTTAA 169811
|||||||||||| | ||| || ||
Sbjct 16098 CCCCGTCAGTCCCGACATATTCAA 16121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 775163815472800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |