Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq72314 95.1 1e-14
seq146937 89.7 4e-13
seq196472 86.0 5e-12
>seq72314
Length=63918
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| ||||| ||||| || |||||||| || ||| ||| ||
Sbjct 54546 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTGAAAGCTCG 54605
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| ||| | | || | ||| ||||| ||||| ||||| | || |||||
Sbjct 54606 GACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATCCCGCCGGATCAG 54665
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| || || ||||| || ||||||||||||||| ||| | || |||||||||
Sbjct 54666 CAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGCGTACTCTCGCAGATTATAAC 54725
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
|||||||| || || || || ||| | || | || || | || |||||
Sbjct 54726 ATTCAAAAGGAGTCAACCCTCCACCTAGTTCTCAGGCTAAGGGGTGGGAT 54775
>seq146937
Length=209544
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || ||||| || || || || || |||||||| || || ||| |||
Sbjct 83852 ATGCAGATTTTTGTGAAGACGTTGACAGGGAAAACCATCACTTTGGAGGTGGAGAGTTCC 83911
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | || | ||| || || ||||| ||||| | ||| |||||
Sbjct 83912 GATACTATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 83971
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| || || ||||| || || || ||||||||| | |||| |||| |||||||||
Sbjct 83972 CAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACTCTGGCGGATTATAAC 84031
Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757
|| || || || || |||||||||
Sbjct 84032 ATCCAGAAGGAGTCGACTCTGCAC 84055
>seq196472
Length=12654
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| || || ||||| || ||||| || || ||| || ||
Sbjct 7927 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 7986
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| ||| | | | || | ||| ||||| ||||| ||||| | || |||||
Sbjct 7987 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 8046
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| || || ||||| || || ||||| |||||| |||| |||| ||||||||
Sbjct 8047 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 8106
Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757
||| || || ||||| || || |||
Sbjct 8107 CATCCAGAAGGAATCCACCCTTCAC 8131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424088331404922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |