Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq72314 95.1 1e-14 seq146937 89.7 4e-13 seq196472 86.0 5e-12 >seq72314 Length=63918 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| ||||| || |||||||| || ||| ||| || Sbjct 54546 ATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGGAAGTTGAAAGCTCG 54605 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 54606 GACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATCCCGCCGGATCAG 54665 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || ||||||||||||||| ||| | || ||||||||| Sbjct 54666 CAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGCGTACTCTCGCAGATTATAAC 54725 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || || || ||| | || | || || | || ||||| Sbjct 54726 ATTCAAAAGGAGTCAACCCTCCACCTAGTTCTCAGGCTAAGGGGTGGGAT 54775 >seq146937 Length=209544 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| || || ||| ||| Sbjct 83852 ATGCAGATTTTTGTGAAGACGTTGACAGGGAAAACCATCACTTTGGAGGTGGAGAGTTCC 83911 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || || ||||| ||||| | ||| ||||| Sbjct 83912 GATACTATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 83971 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || || || ||||||||| | |||| |||| ||||||||| Sbjct 83972 CAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACTCTGGCGGATTATAAC 84031 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || || || || ||||||||| Sbjct 84032 ATCCAGAAGGAGTCGACTCTGCAC 84055 >seq196472 Length=12654 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || ||||| || ||||| || || ||| || || Sbjct 7927 AATGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 7986 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | || | ||| ||||| ||||| ||||| | || ||||| Sbjct 7987 GGACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCA 8046 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||||| |||||| |||| |||| |||||||| Sbjct 8047 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAA 8106 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || || ||||| || || ||| Sbjct 8107 CATCCAGAAGGAATCCACCCTTCAC 8131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424088331404922