Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq208208 111 2e-19
seq162102 111 2e-19
seq207449 98.7 1e-15
>seq208208
Length=133897
Score = 111 bits (122), Expect = 2e-19
Identities = 281/420 (67%), Gaps = 8/420 (2%)
Strand=Plus/Plus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289
||| | || || ||| | ||| | |||||||| | || | ||||| | | | || ||
Sbjct 37363 GAGGTAGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 37421
Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349
||| | ||||| | ||| || ||||| || || ||||| || || || ||
Sbjct 37422 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTAGCAAAGGCAAT 37481
Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| |||||| | ||| ||||| || || | || | || | ||||| |||||||
Sbjct 37482 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 37540
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
|||||||||| || ||| | || |||||||| || | | ||| |||||| |
Sbjct 37541 TTGTTGGTGTAGGAGCCTCTCGAGTCCGCGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 37600
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526
| || ||||| || ||||||| |||||||| || || |||| | | |||| | |
Sbjct 37601 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 37660
Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586
| | || ||||| || || ||||| || | || |||||| | || || ||||||||
Sbjct 37661 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACGGAAATGGATGG 37718
Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
|| || | ||||| || | ||| ||||||| || ||||| | ||||| |||||
Sbjct 37719 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 37778
>seq162102
Length=94307
Score = 111 bits (122), Expect = 2e-19
Identities = 246/366 (67%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
||||| || || ||||| | || || || ||||| || ||| || | || || |||
Sbjct 31271 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCGTTC 31330
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
| ||||| || | || || |||||||||||||||||||| || || |||
Sbjct 31331 TTATCTCTCTCTGGTTCAGAGTTCGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 31390
Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494
| || | || | | || ||||| ||| ||| | ||||| ||||||||||||
Sbjct 31391 AGGGACTTATTCAACAAGGCAAAGCAAAATTCACCTTGTTTAGTCTTTATTGATGAGATT 31450
Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554
||||| || || | |||| | | ||||| | | |||||| || ||||| ||
Sbjct 31451 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGTGGTGGAAATGATGAAAGAGAGCAG 31510
Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611
||| |||| ||||| ||||| || |||||||| ||| || || | ||||| | |
Sbjct 31511 ACACTTAACCAACTTCTCACTGAAATGGATGG-TTTTACTGGAA--ACACTGGAGTCATT 31567
Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671
|| ||||| || |||||| | || || |||||| | || | ||||| || || |
Sbjct 31568 GTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGA 31627
Query 175672 TTTGAT 175677
||||||
Sbjct 31628 TTTGAT 31633
>seq207449
Length=20620
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/282 (68%), Gaps = 14/282 (5%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| ||||| || |||||||| | || |||| | || ||||| || ||| |||||
Sbjct 9675 CCTGGTACTGGTAAGACCCTTTTGGCTAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 9616
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| || | || || | ||||| ||| ||||||| |||||||| || || ||
Sbjct 9615 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTA 9556
Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
| ||| | ||||| | || | ||| | || |||||||| || |||||||||||
Sbjct 9555 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 9497
Query 175494 TGATGCGGTGGGCAAGCAA-----CGCAGCGC-TGGTGGTATGCCAGCAAATGACGAGAG 175547
|||||| || || | |||| |||| || ||| ||| | |||||| |||||
Sbjct 9496 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 9443
Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
||| || || |||||||| || | || || |||||||| ||
Sbjct 9442 AGAGCAGACTATTAATCAGCTCTTGACAGAAATGGATGGGTT 9401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594676103003840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |