Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq208208 111 2e-19 seq162102 111 2e-19 seq207449 98.7 1e-15 >seq208208 Length=133897 Score = 111 bits (122), Expect = 2e-19 Identities = 281/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| | |||||||| | || | ||||| | | | || || Sbjct 37363 GAGGTAGTAGAATTTTTGAAGAAGCCCGAGAGGT-TTACCGCAGTGGGGGCTCGTATTCC 37421 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || || ||||| || || || || Sbjct 37422 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCCTGCTAGCAAAGGCAAT 37481 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| ||||| || || | || | || | ||||| ||||||| Sbjct 37482 TGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATT-TCAGGTTCAGAATTTGTTGAGATGT 37540 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || |||||||| || | | ||| |||||| | Sbjct 37541 TTGTTGGTGTAGGAGCCTCTCGAGTCCGCGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 37600 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 37601 CCTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 37660 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || ||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 37661 GAGG--AGGGAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACGGAAATGGATGG 37718 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 37719 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 37778 >seq162102 Length=94307 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || || ||||| | || || || ||||| || ||| || | || || ||| Sbjct 31271 CCAGGGACAGGGAAGACATTGCTAGCTAAGGCGATCGCCGGAGAAGCAGAGGTTCCGTTC 31330 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||||| || | || || |||||||||||||||||||| || || ||| Sbjct 31331 TTATCTCTCTCTGGTTCAGAGTTCGTTGAGATGTTTGTTGGTGTGGGAGCTTCTAGAGTT 31390 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | || | || | | || ||||| ||| ||| | ||||| |||||||||||| Sbjct 31391 AGGGACTTATTCAACAAGGCAAAGCAAAATTCACCTTGTTTAGTCTTTATTGATGAGATT 31450 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| || || | |||| | | ||||| | | |||||| || ||||| || Sbjct 31451 GATGCTGTTGGGAGGCAAAGAGGAACTGGTATTGGTGGTGGAAATGATGAAAGAGAGCAG 31510 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTG 175611 ||| |||| ||||| ||||| || |||||||| ||| || || | ||||| | | Sbjct 31511 ACACTTAACCAACTTCTCACTGAAATGGATGG-TTTTACTGGAA--ACACTGGAGTCATT 31567 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || |||||| | || || |||||| | || | ||||| || || | Sbjct 31568 GTCATTGCTGCTACTAATAGGCCTGAAATTCTTGATCAAGCTTTGCTTCGACCTGGAAGA 31627 Query 175672 TTTGAT 175677 |||||| Sbjct 31628 TTTGAT 31633 >seq207449 Length=20620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || ||||| || |||||||| | || |||| | || ||||| || ||| ||||| Sbjct 9675 CCTGGTACTGGTAAGACCCTTTTGGCTAGAGCAGTAGCTGGTGAGGCAGGTGTGCCATTT 9616 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || || Sbjct 9615 TTCTCATGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTA 9556 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | ||| | ||||| | || | ||| | || |||||||| || ||||||||||| Sbjct 9555 AGGGATTTGTTTGAGAAGGCGAAGTCGAAAGCG-CCTTGTATTGTGTTTATTGATGAGAT 9497 Query 175494 TGATGCGGTGGGCAAGCAA-----CGCAGCGC-TGGTGGTATGCCAGCAAATGACGAGAG 175547 |||||| || || | |||| |||| || ||| ||| | |||||| ||||| Sbjct 9496 TGATGCTGTTGGAAGGCAAAGAGGGGCAGGGCTTGGAGGT------GGAAATGATGAGAG 9443 Query 175548 AGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 ||| || || |||||||| || | || || |||||||| || Sbjct 9442 AGAGCAGACTATTAATCAGCTCTTGACAGAAATGGATGGGTT 9401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594676103003840