Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq196472 140 5e-28
seq242921 113 7e-20
seq140002 111 2e-19
seq188529 109 8e-19
seq58802 100 4e-16
seq182928 91.5 2e-13
seq72314 91.5 2e-13
seq146937 84.2 3e-11
>seq196472
Length=12654
Score = 140 bits (154), Expect = 5e-28
Identities = 159/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||||||| |||| ||||||||||||||||| || ||||| ||||| || |
Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | |||| ||||| ||| ||||| |||||||| ||||| || || || || ||
Sbjct 7759 GGACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 7818
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|||||| |||||| ||| || ||||| | |||||| | ||| | ||||||||||
Sbjct 7819 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 7878
Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031
||| || ||| ||| | ||||| || ||||
Sbjct 7879 TAT-TCAAAAGGAGTCAACGCTCCACCTAGT 7908
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||| || || || || || || || || || |||
Sbjct 8156 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAGACGATCACGTTGGAGGTGGAGAGTTCC 8215
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || ||||| ||||| || || || || ||||| ||
Sbjct 8216 GATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGATCAG 8275
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| ||| || || || | |||||| |||||| | | ||||||||
Sbjct 8276 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGAAGAACTCTGGCTGATTATAAC 8335
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031
|| || ||| ||| |||| || || ||||
Sbjct 8336 AT-TCAAAAGGAGTCGACACTCCACCTAGT 8364
Score = 93.3 bits (102), Expect = 6e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || ||||||| || || |||||||| || ||||| ||||| || ||
Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || ||||| || ||||| ||||||||||| ||||| || || ||
Sbjct 8443 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 8502
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || | || | ||| || |||||| | || ||| || || | | ||||| ||
Sbjct 8503 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 8562
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037
||| || ||| | || || ||| | ||||| ||
Sbjct 8563 TATCCAGAAGGAGTCTACACTCCATCTTGTGTTGAG 8598
>seq242921
Length=127737
Score = 113 bits (124), Expect = 7e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||| || || || || || || || |||||| ||||
Sbjct 49791 ATGCAGATCTTTGTGAAGACATTGACAGGGAAGACAATCACCTTGGAGGTCGAAAGTTCT 49850
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || || |||||||||||||| || || || || ||
Sbjct 49851 GATACAATTGATAATGTGAAGGCGAAGATCCAAGATAAAGAAGGGATTCCACCGGATCAG 49910
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||| | ||| ||||||||||| || ||| || || | | |||||||||
Sbjct 49911 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACCCTTGCTGATTATAAT 49970
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| || ||| | || || ||||| |||
Sbjct 49971 ATCCAGAAGGAGTCCACACTGCATTTGGTG 50000
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| |||||||| || || || || | || || || |||
Sbjct 49107 ATGCAGATCTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCT 49166
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || || || || || || |||||||| |||||||| ||
Sbjct 49167 GACACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 49226
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || ||||||| ||| ||||||||||| || |||
Sbjct 49227 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGAT 49262
Score = 84.2 bits (92), Expect = 3e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| |||||||| || || || || | || || || ||
Sbjct 49335 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 49394
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || || || || || || |||||||| |||||||| ||
Sbjct 49395 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCAGATCAG 49454
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || ||||||| ||| |||||||||||||| |||
Sbjct 49455 CAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGAT 49490
>seq140002
Length=100703
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| ||||| ||||| |||||||| | || || || ||||
Sbjct 55561 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCT 55620
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| |||||| || |||||||||||||| |||||||| ||
Sbjct 55621 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 55680
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| || ||||| | ||| || ||||| || || |||
Sbjct 55681 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGAT 55716
>seq188529
Length=122975
Score = 109 bits (120), Expect = 8e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || ||| | ||||||||||| ||||| | || || || |||
Sbjct 109028 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGAGAGTTCA 109087
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| ||||| ||||| || ||||| || || || || ||
Sbjct 109088 GACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGACCAG 109147
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||| | ||| || ||||| || |||||| || || | | ||||||||
Sbjct 109148 CAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAAC 109207
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
||| || ||| |||| |||||| | ||||| | || || || |||
Sbjct 109208 ATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGT 109255
Score = 100 bits (110), Expect = 4e-16
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | ||||| ||||| ||||| || || || || ||||| || |||
Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| |||||||| ||||| || ||||||||||| || || ||||| ||
Sbjct 109316 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCAG 109375
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || ||| | || | ||||||| |
Sbjct 109376 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACA-- 109433
Query 156003 ATATCCAAA 156011
|||||||||
Sbjct 109434 ATATCCAAA 109442
>seq58802
Length=2471
Score = 100 bits (110), Expect = 4e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || ||||||||||| || || || || || || || || ||
Sbjct 1924 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAGGTGGAGAGCTCA 1983
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || ||||| ||||| |||||||| || ||||| ||
Sbjct 1984 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATGCCACCAGATCAG 2043
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || ||| | | || | |||| || |||
Sbjct 2044 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAAT 2103
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| |||||| | || |||||| | |||
Sbjct 2104 ATCCAGAAAGAGTCTACTCTTCATCTCGTG 2133
>seq182928
Length=15200
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || |||||||||| || || || || || || || || ||
Sbjct 5105 ATGCAGATCTTTGTGAAGGCATTGACTGGGAAGACAATCACCTTGGAGGTGGAGAGCTCG 5164
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || ||||| ||||| |||||||| || ||||| ||
Sbjct 5165 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATTCCACCAGATCAG 5224
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || | || | ||| ||||||||||| || ||| | | || | |||| || |||
Sbjct 5225 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACGCTTGCAGACTACAAT 5284
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| |||||| | || |||||| | |||
Sbjct 5285 ATCCAGAAAGAGTCTACTCTTCATCTCGTG 5314
>seq72314
Length=63918
Score = 91.5 bits (100), Expect = 2e-13
Identities = 135/190 (71%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || ||||| || || || || || || || || || ||||
Sbjct 55230 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTCT 55289
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| || ||||| ||||| || || || || ||||| ||
Sbjct 55290 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATTCCACCAGACCAG 55349
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||| |||||| ||| || || || | |||||| || ||| | |||||||||||
Sbjct 55350 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAAT 55409
Query 156003 ATATCCAAAG 156012
|| || ||||
Sbjct 55410 AT-TCAAAAG 55418
Score = 89.7 bits (98), Expect = 8e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || || ||||||||||| || || || ||||| || ||
Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || || || ||||| |||||||| |||||||| || || || ||
Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || |||||| ||| || || || | |||||| || ||| | | || |||||
Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636
Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031
|| || ||| ||| | || || || ||||
Sbjct 55637 CAT-TCAAAAGGAGTCAACACTCCACCTAGT 55666
Score = 84.2 bits (92), Expect = 3e-11
Identities = 167/242 (69%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 155810 TTTATGTAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAG 155868
||||| ||||| | ||||| || ||| ||||||| || ||||||||||| || ||| | |
Sbjct 54533 TTTAT-TAATACAGATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGG 54591
Query 155869 AAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCA 155928
|||| ||| || || | || || || || ||||| ||||| || || || |
Sbjct 54592 AAGTTGAAAGCTCGGACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTA 54651
Query 155929 TACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTT 155988
| || || || || || || |||||| ||| || || || | |||||| | |||
Sbjct 54652 TCCCGCCGGATCAGCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGCGTACTC 54711
Query 155989 TATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047
| |||||||||| || || ||| ||| | || || || |||| | || |||| ||
Sbjct 54712 TCGCAGATTATAACAT-TCAAAAGGAGTCAACCCTCCACCTAGTTCTCAGGCTAAGGGGT 54770
Query 156048 GG 156049
||
Sbjct 54771 GG 54772
>seq146937
Length=209544
Score = 84.2 bits (92), Expect = 3e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 155810 TTTATGTA-ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||| |||| ||| | ||||| || || | ||||| | || |||||||| || || |
Sbjct 82925 TTTTTGTATATACAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACAATCACCCTT 82984
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
|| || ||| || || | |||| ||||| || ||| || || || ||||||||
Sbjct 82985 GAGGTTGAAAGCTCCGACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGA 83044
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987
|| || || || || || || ||||| | ||||| |||||||||||||| |||||
Sbjct 83045 ATCCCACCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTAGAACC 83104
Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032
|| | || || || || || || |||| ||||| || |||
Sbjct 83105 CTAGCCGACTACAACATCCAGAAGGAATCGACCCTTCACTTGGTG 83149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 729549056568800
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