Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq196472 140 5e-28 seq242921 113 7e-20 seq140002 111 2e-19 seq188529 109 8e-19 seq58802 100 4e-16 seq182928 91.5 2e-13 seq72314 91.5 2e-13 seq146937 84.2 3e-11 >seq196472 Length=12654 Score = 140 bits (154), Expect = 5e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| ||||||||||||||||| || ||||| ||||| || | Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||||| ||| ||||| |||||||| ||||| || || || || || Sbjct 7759 GGACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 7818 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| |||||| ||| || ||||| | |||||| | ||| | |||||||||| Sbjct 7819 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 7878 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| ||| | ||||| || |||| Sbjct 7879 TAT-TCAAAAGGAGTCAACGCTCCACCTAGT 7908 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || || || || || ||| Sbjct 8156 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAGACGATCACGTTGGAGGTGGAGAGTTCC 8215 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || ||||| ||||| || || || || ||||| || Sbjct 8216 GATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGATCAG 8275 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || || | |||||| |||||| | | |||||||| Sbjct 8276 CAAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGAAGAACTCTGGCTGATTATAAC 8335 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| |||| || || |||| Sbjct 8336 AT-TCAAAAGGAGTCGACACTCCACCTAGT 8364 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || ||||||| || || |||||||| || ||||| ||||| || || Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| || ||||| ||||||||||| ||||| || || || Sbjct 8443 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 8502 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||| | || ||| || || | | ||||| || Sbjct 8503 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 8562 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 ||| || ||| | || || ||| | ||||| || Sbjct 8563 TATCCAGAAGGAGTCTACACTCCATCTTGTGTTGAG 8598 >seq242921 Length=127737 Score = 113 bits (124), Expect = 7e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| || || || || || || || |||||| |||| Sbjct 49791 ATGCAGATCTTTGTGAAGACATTGACAGGGAAGACAATCACCTTGGAGGTCGAAAGTTCT 49850 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || |||||||||||||| || || || || || Sbjct 49851 GATACAATTGATAATGTGAAGGCGAAGATCCAAGATAAAGAAGGGATTCCACCGGATCAG 49910 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| ||||||||||| || ||| || || | | ||||||||| Sbjct 49911 CAGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACCCTTGCTGATTATAAT 49970 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || ||||| ||| Sbjct 49971 ATCCAGAAGGAGTCCACACTGCATTTGGTG 50000 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||| || || || || | || || || ||| Sbjct 49107 ATGCAGATCTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCT 49166 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || |||||||| |||||||| || Sbjct 49167 GACACCATTGACAATGTTAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 49226 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||| ||| ||||||||||| || ||| Sbjct 49227 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGAT 49262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||||||| || || || || | || || || || Sbjct 49335 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 49394 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || |||||||| |||||||| || Sbjct 49395 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCAGATCAG 49454 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||| ||| |||||||||||||| ||| Sbjct 49455 CAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGAT 49490 >seq140002 Length=100703 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| ||||| |||||||| | || || || |||| Sbjct 55561 ATGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCT 55620 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| |||||| || |||||||||||||| |||||||| || Sbjct 55621 GATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAG 55680 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || ||||| || || ||| Sbjct 55681 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGAT 55716 >seq188529 Length=122975 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||| | ||||||||||| ||||| | || || || ||| Sbjct 109028 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGAGAGTTCA 109087 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| || ||||| || || || || || Sbjct 109088 GACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGACCAG 109147 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| || |||||| || || | | |||||||| Sbjct 109148 CAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTATAAC 109207 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || ||| |||| |||||| | ||||| | || || || ||| Sbjct 109208 ATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGT 109255 Score = 100 bits (110), Expect = 4e-16 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| ||||| || || || || ||||| || ||| Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||||| ||||| || ||||||||||| || || ||||| || Sbjct 109316 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCAG 109375 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | || | ||||||| | Sbjct 109376 CAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACA-- 109433 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 109434 ATATCCAAA 109442 >seq58802 Length=2471 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||||||||||| || || || || || || || || || Sbjct 1924 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAGGTGGAGAGCTCA 1983 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || ||||| ||||| |||||||| || ||||| || Sbjct 1984 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATGCCACCAGATCAG 2043 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | | || | |||| || ||| Sbjct 2044 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAAT 2103 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || |||||| | ||| Sbjct 2104 ATCCAGAAAGAGTCTACTCTTCATCTCGTG 2133 >seq182928 Length=15200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||||| || || || || || || || || || Sbjct 5105 ATGCAGATCTTTGTGAAGGCATTGACTGGGAAGACAATCACCTTGGAGGTGGAGAGCTCG 5164 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || ||||| ||||| |||||||| || ||||| || Sbjct 5165 GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATTCCACCAGATCAG 5224 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| || ||| | | || | |||| || ||| Sbjct 5225 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACGCTTGCAGACTACAAT 5284 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || |||||| | ||| Sbjct 5285 ATCCAGAAAGAGTCTACTCTTCATCTCGTG 5314 >seq72314 Length=63918 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || || || || || |||| Sbjct 55230 ATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTCT 55289 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || ||||| ||||| || || || || ||||| || Sbjct 55290 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATTCCACCAGACCAG 55349 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||||| ||| || || || | |||||| || ||| | ||||||||||| Sbjct 55350 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAAT 55409 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 55410 AT-TCAAAAG 55418 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || || ||||||||||| || || || ||||| || || Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || ||||| |||||||| |||||||| || || || || Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||||| ||| || || || | |||||| || ||| | | || ||||| Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| | || || || |||| Sbjct 55637 CAT-TCAAAAGGAGTCAACACTCCACCTAGT 55666 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAG 155868 ||||| ||||| | ||||| || ||| ||||||| || ||||||||||| || ||| | | Sbjct 54533 TTTAT-TAATACAGATGCAGATCTTTGTTAAAACCTTAACTGGAAAAACCATCACACTGG 54591 Query 155869 AAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCA 155928 |||| ||| || || | || || || || ||||| ||||| || || || | Sbjct 54592 AAGTTGAAAGCTCGGACACGATAGATAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTA 54651 Query 155929 TACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTT 155988 | || || || || || || |||||| ||| || || || | |||||| | ||| Sbjct 54652 TCCCGCCGGATCAGCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGCGTACTC 54711 Query 155989 TATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | |||||||||| || || ||| ||| | || || || |||| | || |||| || Sbjct 54712 TCGCAGATTATAACAT-TCAAAAGGAGTCAACCCTCCACCTAGTTCTCAGGCTAAGGGGT 54770 Query 156048 GG 156049 || Sbjct 54771 GG 54772 >seq146937 Length=209544 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 155810 TTTATGTA-ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||| |||| ||| | ||||| || || | ||||| | || |||||||| || || | Sbjct 82925 TTTTTGTATATACAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACAATCACCCTT 82984 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 || || ||| || || | |||| ||||| || ||| || || || |||||||| Sbjct 82985 GAGGTTGAAAGCTCCGACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGA 83044 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || || || || || || || ||||| | ||||| |||||||||||||| ||||| Sbjct 83045 ATCCCACCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTAGAACC 83104 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || | || || || || || || |||| ||||| || ||| Sbjct 83105 CTAGCCGACTACAACATCCAGAAGGAATCGACCCTTCACTTGGTG 83149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729549056568800