Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq162102 163 8e-35 seq207449 150 5e-31 seq243809 147 6e-30 seq238086 140 1e-27 seq201117 125 2e-23 seq208208 120 9e-22 seq222586 113 1e-19 seq46570 96.9 1e-14 seq68869 87.8 5e-12 >seq162102 Length=94307 Score = 163 bits (180), Expect = 8e-35 Identities = 289/415 (70%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | || ||| |||||||| || || |||||||||||| || Sbjct 31547 TAAAACCATCCATTTCAGTGAGAAGTTGGTTAAGTGTCTGCTCTCTTTCATCATTTCCAC 31488 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||| ||| | || ||| ||| | |||||||||||||| || ||||| || | Sbjct 31487 CACC--AAT-ACCAGT-TC-CTC-TTTGCCTCCCAACAGCATCAATCTCATCAATAAAGA 31434 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||| || |||||||| | || | ||||| || || || | || ||||| | Sbjct 31433 CTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAGTCCCTAACTCTAGAAGCTCCCA 31374 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 ||||||| |||| || || || || ||| | || | | ||| | || | ||||| Sbjct 31373 CACCAACAAACATCTCAACGAACTCTGAACCAGAGAGAGATAAGAACGGAACCTCTGCTT 31314 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | ||| | || || | |||||| ||||| || ||||| || |||| |||| Sbjct 31313 CTCCGGCGATCGCCTTAGCTAGCAATGTCTTCCCTGTCCCTGGTGGCCCTACTAAGAGAA 31254 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 |||||||||||| ||||||||| | | | | || || ||| | || || || || | Sbjct 31253 CTCCCTTTGGTATCTTTGCCCCAACTGCAGCAAACTTTTCTGGGGTTTTCAAGAACTCAA 31194 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||| || | || || | ||||| ||||| ||| || |||||| |||| || Sbjct 31193 CAATCTCTTGAAAATCTTGCTTTGCATCATCTACTCCAGCCACATCATCAAATGT 31139 >seq207449 Length=20620 Score = 150 bits (166), Expect = 5e-31 Identities = 326/471 (69%), Gaps = 24/471 (5%) Strand=Plus/Plus Query 288891 ATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGG--TTTGCTTA-AATCCATC 288947 ||| | ||| |||||||| ||||| ||| ||| | | | ||| | | || ||||| Sbjct 9352 ATCTGGTCTATTTGTTGCAGCCAA---AACTATAACTCCAGAATTTCCAGAGAACCCATC 9408 Query 288948 CATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATC 289007 ||| ||| || | ||||||| || || || || ||||||||| ||||| || | Sbjct 9409 CATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACCTCC--AAGC 9466 Query 289008 ACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGG 289067 || | | ||| || || |||||||||||||| || ||||| || | | ||| || Sbjct 9467 -CCTGC--CCCTCTTTGCCTT-CCAACAGCATCAATCTCATCAATAAACACAATACAAGG 9522 Query 289068 AGAATTTTGTCT-CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACAT 289126 | ||| | || ||| | |||| || || ||||| | || ||||| | ||| ||| Sbjct 9523 CGC-TTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCACACCCACAA 9581 Query 289127 ACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCT 289185 ||| || ||||| || || || | || ||| | |||| ||| ||| || || ||| Sbjct 9582 ACAACTCAACAAACTCTGATGCTGC-ACATGAGAAAAATGGCACACCTGCCTCACCAGCT 9640 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT 289245 ||||| || |||| ||| |||||||| || |||||||||||| | || ||| || ||| Sbjct 9641 ACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGGTGGTCCCACCAAAAGACACCCTTTT 9700 Query 289246 GGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATT 289302 |||| || || || ||||| |||| || ||||| | || || || || |||| | Sbjct 9701 GGTATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTTTTCAAGAAATCAACAACT 9757 Query 289303 TCCT-CAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | ||| | || | || |||| |||| || || ||||||||||| || Sbjct 9758 TCTTGCAACTCCA-ACTTGGCCTGATCAGCACCAGCAACATCAGCAAATGT 9807 >seq243809 Length=169429 Score = 147 bits (162), Expect = 6e-30 Identities = 287/418 (69%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | |||||||| || || || || |||||||| ||| Sbjct 56241 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCACC 56182 Query 288999 TC---TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 || || |||| || || | || || ||||||||||| || ||||| || Sbjct 56181 TCCCATTCCTGCACC----TCTCTGCCTT-----CCCACAGCATCAATCTCATCAATAAA 56131 Query 289056 AATCACACACGGAGAATTTTGTCT-CGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | | || || | ||| | || ||| | | || || || || || | || |||| Sbjct 56130 CACAATGCAAGGCGC-TTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTC 56072 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTT 289173 ||| ||||||| ||| || ||||| || || || | || ||| | |||| |||| Sbjct 56071 CAACACCAACAAACAACTCAACAAACTCTGATGCTGC-ACATGAGAAAAATGGTACACCA 56013 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || || ||||| || |||| ||||||||| ||||| |||||||||||| | || Sbjct 56012 GCTTCACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGTGGTCCCACCAAA 55953 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||| || ||||||| ||| || || || |||| || ||||| |||||||||| Sbjct 55952 AGACACCCTTTTGGTATTTTAGCACCTAAAGCTGTATACTTATCAGGATTCTTTAAAAAA 55893 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 || || | ||| | | || |||| || | |||| || || ||||||||||||| Sbjct 55892 TCAACTACTTCTTGTAACTCCAATTTAGCTTGATCAGCACCAGCAACATCAGCAAAAG 55835 >seq238086 Length=64465 Score = 140 bits (154), Expect = 1e-27 Identities = 221/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || || ||||| ||| | ||| || | ||| || || ||||| ||| ||||| Sbjct 11162 CATGATATCCTCCATGGCCTTCACTAATCGCCTCTGGATGTACCCAGTCTCAGAAGTTTT 11221 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||||||||| | | ||||||||||||||| ||||| | ||| | ||| Sbjct 11222 CACAGCAGTATCAATTAGACCTTCTCTACCACCCATAGCATGAAAGAAGAACTCCTGCGG 11281 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || |||| | | | || |||| || |||||||| || || || || Sbjct 11282 GGTCAGTCCCCGGAGATATGAATTCTCCACAAAACCACGACTTTCTGGACCATAATCATC 11341 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 ||||||||| || || || || | || | | | | || | || ||||| || || |||| Sbjct 11342 CTTGGTAAAATGAGGTAGAGTACGGTCTATGA-ACCCAAAAGGAATACGTTTCCCTTCAA 11400 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | |||| || || || || | | ||| |||||||| | Sbjct 11401 CATTCTGCTGCCCCACACAAGCAGTCATTTGAGATATGTTAATAAAACTTCCCTTGGACC 11460 Query 302864 CAGCATTTACCATA 302877 ||||| | |||||| Sbjct 11461 CAGCAGTAACCATA 11474 >seq201117 Length=63249 Score = 125 bits (138), Expect = 2e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || || || |||||| | |||| ||| ||| | ||| || ||| Sbjct 33518 ACAAACATGAACTCTATATGCATCACTTTGGTCAAATAACCGCTCTTTGAGAAAATGAGC 33577 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||| | |||||||||||| |||||||| || ||||| |||||||||||||| || Sbjct 33578 AGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCCGAATCGAAGACCACCATCACG 33637 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | || ||| || |||||||| | ||||| | || ||| || || | ||| Sbjct 33638 TGACCGACCTTCCGCAGGCTGCCTTGTGAGGATTTGCACAGGGCCTCTGCCTCTAGAATG 33697 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| |||| ||||| ||||| || ||||||||| | | |||||| | ||| || Sbjct 33698 AATCTTGTCATCAACCATGTGCTTCAGTCGCTGGTAGTACGTGGGACCAAGGAATAT 33754 >seq208208 Length=133897 Score = 120 bits (132), Expect = 9e-22 Identities = 283/417 (68%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | ||| || || || ||||||||||||||||| ||| Sbjct 37721 AAACCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCTCCT 37662 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| | | || ||| ||| ||||||||||||||||| |||| || | Sbjct 37661 CC--AATTCC---AGTCCCTC-TTTGCCGCCCAACAGCATCAATTTCATCAACAAATACA 37608 Query 289060 ACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||||| | || | || ||| | || | || || || ||||| | Sbjct 37607 ATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAAAGA--TCGCGGACTCGAGAGGCTCCTA 37550 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| |||| || |||||||| ||| | || | |||| | |||| ||| ||| Sbjct 37549 CACCAACAAACATCTCAACAAATTCTGAACCTGAAA-TTGAGAAAAATGGAACACCCGCT 37491 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || | |||| | || || || || || || || ||||| || || | | ||| Sbjct 37490 TCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGA 37431 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || || ||||| | ||||| | | || | |||| || |||| ||||||||| Sbjct 37430 ACACCTTTTGGAATACGAGCCCCCACTGCGGTAAACCTCTCGGGCTTCTTCAAAAATTCT 37371 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGT 289352 || | ||| || || | |||||||||||| ||| || || |||||| |||| || Sbjct 37370 ACTACCTCCATAAAATCTTGTTTTGCCTCATCTACA-CCAGCAACATCATCAAACGT 37315 >seq222586 Length=74527 Score = 113 bits (124), Expect = 1e-19 Identities = 324/483 (67%), Gaps = 29/483 (6%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATA---GATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | |||||| | ||| | Sbjct 13588 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTACAACCACGCCTGATGTG 13529 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATT--AAGTGTTTGTTCCCTTTC 288986 ||| || ||| || ||||| || || | |||||| ||||| || || | ||| Sbjct 13528 GTT-GC--AAAGCCGTCCAT--TTCAACAAGCAGTTGATTTAAAGTGCTT--TCACGTTC 13476 Query 288987 ATCATTTGAACCTCTTGAAT---CACCCGAATCGCTC-CtttttttACCAACAGCATCAA 289042 ||||| | |||| ||| ||||| ||| | ||| | ||||| ||||||| Sbjct 13475 ATCATGT---CCTCCAGAAAAGCCACCC----CGCCCTCTTGCTCGACCAATGGCATCAA 13423 Query 289043 TTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTA 289102 | || ||||||||||| | || || | | |||| || |||||| || | Sbjct 13422 TCTCATCAATGAAAATTATACTAGGTGCACACTGTCGTGCCTCCTGAAATAAGCTCCTAA 13363 Query 289103 CACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGA 289162 | | || || ||||| ||||||| |||| || | ||| || || | || | | ||| || Sbjct 13362 CTCTGGCTGGTCCAACACCAACAAACATCTCCATAAAATCTGACCCAGAAA-TAGAAAGA 13304 Query 289163 AT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGT 289221 | | |||| | || || ||| || | || ||||||||||| || || ||||| Sbjct 13303 AAAGGTACACCAGACTCTCCAGCTGTAGCTTTGGCAAGAAGTGTCTTTCCAGTCCCAGGA 13244 Query 289222 GGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGG 289280 || ||| ||| ||| | ||||| |||| ||| || |||||| | || |||||||| || Sbjct 13243 GGACCCACTAGAAGAGCACCCTTGGGTATTTTGGCTCCCAGCTG-CTCATATTTCTTGGG 13185 Query 289281 GCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTAC 289340 | | || | || | |||| ||| | ||| | ||||||||||||||||| || || Sbjct 13184 GTTTTTAAGGAAGTGGACAAACTCCATGATTTCTTGCTTTGCCTCATCACATCCAGCCAC 13125 Query 289341 ATC 289343 ||| Sbjct 13124 ATC 13122 >seq46570 Length=87114 Score = 96.9 bits (106), Expect = 1e-14 Identities = 314/477 (66%), Gaps = 17/477 (4%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATA---GATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | |||||| | | ||| | Sbjct 79182 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTACAACTACACCGGATGTG 79123 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATTAAGTGTTTGTTCCCTTTCAT 288988 ||| || |||||||||||| || | || | |||||| | || || | ||||| Sbjct 79122 GTT-GC--AAATCCATCCAT--TTCTACAAGCAGTTGATTTAAAGTACTCTCACGTTCAT 79068 Query 288989 CATTTGAACCTCTTGAATCACC-CGAATCGCTCCtttttttACCAACAGCATCAATTTCG 289047 ||||| |||| | | || | || ||| || | ||||| ||||||||| || Sbjct 79067 CATTT---CCTCCAGCAAAGCCTCCCTTCCCTC-TTGCTCGACCAATAGCATCAATCTCA 79012 Query 289048 TCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGG 289107 |||||||| | | || || | | |||||| || |||||| || || | Sbjct 79011 TCAATGAATACTATACTAGGTGCACATTGTCTTGCCTCCTGAAATAAGCTCCTAACTCTA 78952 Query 289108 GATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT-GT 289166 |||| |||| ||||||| |||| || | |||||| || | || | | || ||| | Sbjct 78951 GATGGCCCAACACCAACAAACATCTCCATAAATTCTGACCCAGAAA-TCGAGAGAAAAGG 78893 Query 289167 TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 |||| | ||| |||||| || | || ||||||||||| || |||||||| || || Sbjct 78892 TACACCAGATTCTCCTGCTGTAGCTTTAGCTAGAAGTGTCTTTCCAGTTCCAGGAGGACC 78833 Query 289227 CTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTT 289286 | ||| ||| | || || || | ||| || || || || |||| || |||| Sbjct 78832 CACTAGCAGAGCACCTTTAGGAATTTTGGCTCCTAACTCCTCGTACTTCTTGGGATTCTT 78773 Query 289287 TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | || | |||| ||| | ||| | || ||||| |||||||| || ||||| Sbjct 78772 AAGGAAGTGGACAAACTCCATGATTTCTTGCTTAGCCTCGTCACATCCAGCCACATC 78716 >seq68869 Length=49096 Score = 87.8 bits (96), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || | |||||| | | || ||||| || ||||||||||| | ||| | ||| Sbjct 36211 GCAATTAAACCACATTGCTGGCATACATGAACTCTGTAAGCATCGCTTTGATCAAACAGC 36152 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | ||| ||| | | || || || | |||||||| ||||||||||| || || Sbjct 36151 CTCTCTTTGAGGAAATGTGCAGCCCCATGAGCGATCATACAGTCACGCTCCATCTCCCCA 36092 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || || || ||||| |||| || || || |||||||| | ||||||| | || | Sbjct 36091 AATCGTAGGCCTCCATCCCGAGATCTTCCTTCAGCAGGCTGTCTAGTGAGAATCTGCACA 36032 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 ||||| || ||| |||||||| ||||| ||||| || | |||||| Sbjct 36031 GGACCACGACCACGAGAATGGATCTTATCATCCACCATGTGCTTCAGCCTCTGGTA 35976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1467029299926366