Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq118536 158 1e-32 seq55748 93.3 5e-13 seq60525 87.8 2e-11 >seq118536 Length=58152 Score = 158 bits (174), Expect = 1e-32 Identities = 198/272 (73%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || ||||| ||||||||||| || || | | |||| || |||||| Sbjct 25135 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGG 25076 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||||| ||||| || ||||||||||| |||||||||| Sbjct 25075 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 25016 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| || || | || || | | || | ||||||| | Sbjct 25015 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGG 24956 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 || |||| | || || || || || ||||||| ||||| ||| ||||||||| Sbjct 24955 GTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 24896 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||| | ||| |||| | || ||||| Sbjct 24895 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 24864 >seq55748 Length=95267 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| | |||||||| |||||| ||||| || || ||||||| || Sbjct 53836 GCTGCTAACTATTTGAACATCAAGAGTCTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 53777 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| || | || |||||||||||||||||||| ||||||||| Sbjct 53776 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 53726 >seq60525 Length=110196 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||| | |||||||| ||||| ||||| || | ||||||| || Sbjct 32858 GCTGCCAACTACTTGAACATCAAGAGCCTGCTTGATCTCACATGTCAAACTGTGGCTGAC 32799 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||| || || ||| | || ||||||||||| |||||||||||||||||| Sbjct 32798 ATGATTAAAGGGAAGACACCAGAGGAGATCCGGAAGACCTTTAACATCAAG 32748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6086301499822006