Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 158 1e-32
seq55748 93.3 5e-13
seq60525 87.8 2e-11
>seq118536
Length=58152
Score = 158 bits (174), Expect = 1e-32
Identities = 198/272 (73%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||| || || ||||| ||||||||||| || || | | |||| || ||||||
Sbjct 25135 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGG 25076
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||||||||| ||||| ||||| || ||||||||||| ||||||||||
Sbjct 25075 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 25016
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||||||| |||| || || | || || | | || | ||||||| |
Sbjct 25015 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGG 24956
Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872
|| |||| | || || || || || ||||||| ||||| ||| |||||||||
Sbjct 24955 GTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 24896
Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
|| ||||| | ||| |||| | || |||||
Sbjct 24895 ATTTCCCAAATTTGTGGGTATTGAATTGGGAA 24864
>seq55748
Length=95267
Score = 93.3 bits (102), Expect = 5e-13
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || ||||| | |||||||| |||||| ||||| || || ||||||| ||
Sbjct 53836 GCTGCTAACTATTTGAACATCAAGAGTCTGCTTGATCTCACTTGTCAGACTGTGGCAGAC 53777
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||||||||||| || | || |||||||||||||||||||| |||||||||
Sbjct 53776 ATGATCAAGGGGAAAACTCCGGAGGAGATCCGCAAGACCTTCAACATCAAG 53726
>seq60525
Length=110196
Score = 87.8 bits (96), Expect = 2e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||||||| | |||||||| ||||| ||||| || | ||||||| ||
Sbjct 32858 GCTGCCAACTACTTGAACATCAAGAGCCTGCTTGATCTCACATGTCAAACTGTGGCTGAC 32799
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||||| || || ||| | || ||||||||||| ||||||||||||||||||
Sbjct 32798 ATGATTAAAGGGAAGACACCAGAGGAGATCCGGAAGACCTTTAACATCAAG 32748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6086301499822006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |