Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq146937 95.1 1e-14 seq157592 89.7 4e-13 seq242921 86.0 5e-12 seq188529 84.2 2e-11 >seq146937 Length=209544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 |||||| || |||||||| ||||| ||||| |||||||| || | || ||| || | Sbjct 83623 AATGCAGATTTTTGTCAAGACTTTGACCGGGAAAACCATCACTCTTGAGGTGGAAAGCTC 83682 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| ||| ||| | | || || |||||| || || || || | || || Sbjct 83683 TGAC---ACTATCGACAACGTTAAGGCGAAGATCCAGGATAAGGAGGGTATCCCACCAGA 83739 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| ||||| || || | ||| ||||| ||| |||| |||| | |||| | || ||||| Sbjct 83740 TCAGCAAAGGCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTTGCTGATTA 83799 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||| || || || || || |||||| | ||| Sbjct 83800 CAACATCCAGAAGGAGTCAACTTTGCACCTTGTG 83833 >seq157592 Length=32097 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| ||||||| || ||||| || |||| ||| | | Sbjct 25107 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACTCTCGAGGTTGAGAGTTCC 25048 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | |||||| || || ||||| ||||| | ||| ||||| Sbjct 25047 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 24988 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | || || || ||||| ||||| | | || | || ||||||||| Sbjct 24987 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGACGTACCCTAGCCGATTACAAC 24928 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| ||||| |||| | | ||||| || || Sbjct 24927 ATCCAGAAGGAATCTACCCTGCACTTGGTCCTCCGTCTGCGTGGTGG 24881 >seq242921 Length=127737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || |||||||| ||| |||| || || ||||| || | || |||| || | Sbjct 50019 ATGCAGATTTTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCA 50078 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| |||||| ||||| || || | || ||||| Sbjct 50079 -GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGATCA 50137 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || |||| ||| ||||| ||||||||||||| | || | || ||||| || Sbjct 50138 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAA 50197 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || |||||||| || | ||| | ||| Sbjct 50198 CATCCAGAAAGAATCCACCCTTCACCTCGTG 50228 >seq188529 Length=122975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 ||||| || |||||||||||||| || || || ||||| || | ||| |||| || Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | | || || || ||| || |||||||| | || ||| Sbjct 109316 GAC---ACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGAT 109372 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| ||||| ||||||||||||| | || | || |||||| Sbjct 109373 CAGCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTAC 109432 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| ||||| || | ||| | ||| Sbjct 109433 AATATCCAAAAGGAATCCACACTCCACCTTGTG 109465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411564009805574