Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq146937 95.1 1e-14
seq157592 89.7 4e-13
seq242921 86.0 5e-12
seq188529 84.2 2e-11
>seq146937
Length=209544
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328
|||||| || |||||||| ||||| ||||| |||||||| || | || ||| || |
Sbjct 83623 AATGCAGATTTTTGTCAAGACTTTGACCGGGAAAACCATCACTCTTGAGGTGGAAAGCTC 83682
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
|||| ||| ||| | | || || |||||| || || || || | || ||
Sbjct 83683 TGAC---ACTATCGACAACGTTAAGGCGAAGATCCAGGATAAGGAGGGTATCCCACCAGA 83739
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| ||||| || || | ||| ||||| ||| |||| |||| | |||| | || |||||
Sbjct 83740 TCAGCAAAGGCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTTGCTGATTA 83799
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|||||| || || || || || |||||| | |||
Sbjct 83800 CAACATCCAGAAGGAGTCAACTTTGCACCTTGTG 83833
>seq157592
Length=32097
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || ||||| ||||||| || ||||| || |||| ||| | |
Sbjct 25107 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACTCTCGAGGTTGAGAGTTCC 25048
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | |||||| || || ||||| ||||| | ||| |||||
Sbjct 25047 GACACAATCGACAACGTAAAAGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 24988
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||||| ||||| | || || || ||||| ||||| | | || | || |||||||||
Sbjct 24987 CAAAGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGACGTACCCTAGCCGATTACAAC 24928
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || |||||||| ||||| |||| | | ||||| || ||
Sbjct 24927 ATCCAGAAGGAATCTACCCTGCACTTGGTCCTCCGTCTGCGTGGTGG 24881
>seq242921
Length=127737
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331
||||| || |||||||| ||| |||| || || ||||| || | || |||| || |
Sbjct 50019 ATGCAGATTTTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCA 50078
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|||||| | | | || ||| |||||| ||||| || || | || |||||
Sbjct 50079 -GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGATCA 50137
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| || || |||| ||| ||||| ||||||||||||| | || | || ||||| ||
Sbjct 50138 GCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAA 50197
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||| || |||||||| || | ||| | |||
Sbjct 50198 CATCCAGAAAGAATCCACCCTTCACCTCGTG 50228
>seq188529
Length=122975
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/213 (69%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329
||||| || |||||||||||||| || || || ||||| || | ||| |||| ||
Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| ||| | | | | || || || ||| || |||||||| | || |||
Sbjct 109316 GAC---ACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGAT 109372
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || || || | ||| ||||| ||||||||||||| | || | || ||||||
Sbjct 109373 CAGCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTAC 109432
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || ||||| ||||| || | ||| | |||
Sbjct 109433 AATATCCAAAAGGAATCCACACTCCACCTTGTG 109465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 411564009805574
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |