Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 122 1e-21
>seq118536
Length=58152
Score = 122 bits (134), Expect = 1e-21
Identities = 177/249 (71%), Gaps = 1/249 (0%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||||| |||||||| || |||||||| | ||||| ||||| || |||||||||
Sbjct 25090 GCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 25031
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| ||||||||||||||| |||||||| |||| || || | || || | | ||
Sbjct 25030 TCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGG 24971
Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329
| ||||||| || |||| | ||||| || || || ||||| || |||||
Sbjct 24970 GTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCT 24911
Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389
||| ||||||||||| ||||| || || |||| | || ||||||| | || |||
Sbjct 24910 AAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCGA 24851
Query 796390 T-TGGGGTT 796397
| |||| ||
Sbjct 24850 TCTGGGCTT 24842
Score = 93.3 bits (102), Expect = 7e-13
Identities = 194/288 (67%), Gaps = 7/288 (2%)
Strand=Plus/Minus
Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439
|| ||||| | || ||||| || | ||| || || |||||||| || || ||||||||
Sbjct 25375 CCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAA 25316
Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499
|| || || || |||||| | || | ||||| ||||| || || || ||
Sbjct 25315 ATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATC---- 25260
Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559
|||||| | ||||||| ||||| ||| || |||| | || || | |||
Sbjct 25259 --GATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 25202
Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619
|| || | | || ||| | | |||||||| ||| | || | || || |||
Sbjct 25201 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTAC 25142
Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666
|||| |||||||||||||| || ||||| |||||||| || ||||||
Sbjct 25141 ATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 25094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7889235984220002
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |