Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq118536 122 1e-21 >seq118536 Length=58152 Score = 122 bits (134), Expect = 1e-21 Identities = 177/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | ||||| ||||| || ||||||||| Sbjct 25090 GCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 25031 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||||||||| |||||||| |||| || || | || || | | || Sbjct 25030 TCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGG 24971 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| || |||| | ||||| || || || ||||| || ||||| Sbjct 24970 GTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCT 24911 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 ||| ||||||||||| ||||| || || |||| | || ||||||| | || ||| Sbjct 24910 AAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATACAGAACCGA 24851 Query 796390 T-TGGGGTT 796397 | |||| || Sbjct 24850 TCTGGGCTT 24842 Score = 93.3 bits (102), Expect = 7e-13 Identities = 194/288 (67%), Gaps = 7/288 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || ||||| || | ||| || || |||||||| || || |||||||| Sbjct 25375 CCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAA 25316 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || || |||||| | || | ||||| ||||| || || || || Sbjct 25315 ATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCATC---- 25260 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| ||||| ||| || |||| | || || | ||| Sbjct 25259 --GATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCG 25202 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || | | || ||| | | |||||||| ||| | || | || || ||| Sbjct 25201 CGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTAC 25142 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666 |||| |||||||||||||| || ||||| |||||||| || |||||| Sbjct 25141 ATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 25094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7889235984220002