Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq146937 102 6e-17 seq72314 96.9 3e-15 seq188529 95.1 1e-14 seq242921 89.7 4e-13 seq196472 87.8 1e-12 seq58802 84.2 2e-11 >seq146937 Length=209544 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || ||||| |||||||| || | || |||| | | Sbjct 83852 ATGCAGATTTTTGTGAAGACGTTGACAGGGAAAACCATCACTTTGGAGGTGGAGAGTTCC 83911 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || |||||| || || || || | ||| ||||||| Sbjct 83912 GATACTATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 83971 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || || ||| |||| || | | ||| ||||||| || ||| Sbjct 83972 CAGAGGCTGATTTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACTCTGGCGGATTATAAC 84031 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || || |||||||| || ||||| Sbjct 84032 ATCCAGAAGGAGTCGACTCTGCAC 84055 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-AGGCTG 107613 |||||| ||||||||||| ||||| || || |||||||| || | || || | ||| Sbjct 83623 AATGCAGATTTTTGTCAAGACTTTGACCGGGAAAACCATCACTCTTGAGGTGGAAAGCT- 83681 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || ||| ||| | | || || ||||| ||||| || || | || |||| Sbjct 83682 CTGACACTATCGACAACGTTAAGGCGAAGATCCAGGATAAGGAGGGTATCCCACCAGATC 83741 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| || || || | ||| ||||| ||| |||| || | | ||| | || || |||| Sbjct 83742 AGCAAAGGCTGATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTTGCTGATTACA 83801 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || |||||||| || |||||| | ||| Sbjct 83802 ACATCCAGAAGGAGTCAACTTTGCACCTTGTG 83833 >seq72314 Length=63918 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || |||||||||||||| || ||||| || | ||| ||| ||| Sbjct 55685 AATGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTC 55744 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||| || || | || ||| | Sbjct 55745 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGAATTCCACCGGACC 55803 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||| ||||||| | | ||| |||| ||||||| Sbjct 55804 AGCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCCGACTACA 55863 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || |||||||||||| | || | ||| |||| || | || ||| Sbjct 55864 ATATCCAGAAGGAGTCTACGCTCCATCTTGTGCTGAGGCTGAGGGGTGGA 55913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || ||||| || ||||| || || | ||| ||| ||| Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | || || | | | | || || || ||| ||||| |||||| | || ||||| Sbjct 55517 G-GACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATC 55575 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| ||| || ||||| |||| || | | || | || ||||| | Sbjct 55576 AGCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATA 55635 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||||||||||||||| || Sbjct 55636 ACATTCAAAAGGAGTCAAC 55654 >seq188529 Length=122975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || || ||| ||||||||||| | || ||||| Sbjct 109316 -GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGGGATCCCACCAGATCA 109374 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| ||||||||||| | || | || || ||||| Sbjct 109375 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 109434 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| || || | ||| | ||| Sbjct 109435 TATCCAAAAGGAATCCACACTCCACCTTGTG 109465 >seq242921 Length=127737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| |||||||| || || || ||||| ||| | || ||| ||| Sbjct 49335 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTC- 49393 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || |||||| || || |||||| | || ||||| Sbjct 49394 CGACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCAGATCA 49453 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||| ||||| ||||| | ||| | || |||||||| Sbjct 49454 GCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGACGAACTCTTGCTGACTACAA 49513 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 49514 CATCCAGAAGGAGTCCAC 49531 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || ||||| ||||| || |||| ||| | | Sbjct 49563 ATGCAAATTTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGTTCC 49622 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| ||||| ||||| | || |||||| Sbjct 49623 GACACTATTGATAATGTCAAGGCTAAGATTCAGGATAAGGAAGGAATCCCTCCTGATCAG 49682 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| ||||| | | || | || ||||||||| Sbjct 49683 CAGAGGCTGATCTTTGCTGGAAAGCAGCTAGAGGATGGCCGCACTCTTGCTGACTACAAC 49742 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 49743 ATTCAGAAGGAGTCCAC 49759 >seq196472 Length=12654 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || || ||||| ||||| || |||||||| || | ||| ||| ||| Sbjct 8383 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 8442 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || || ||||| ||||||||||| | || ||| | Sbjct 8443 A-GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACC 8501 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || || ||| ||||||| | | || |||| || |||| Sbjct 8502 AGCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACA 8561 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 | || || ||||||||||| | || | |||||||| || | || ||| Sbjct 8562 ATATCCAGAAGGAGTCTACACTCCATCTTGTGTTGAGGCTGAGGGGTGGA 8611 >seq58802 Length=2471 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || || || || || ||| | || |||| ||| Sbjct 1924 ATGCAGATATTTGTGAAGACATTGACTGGGAAGACAATCACCTTGGAGGTGGAGAGCTCA 1983 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| ||||| |||||| |||| ||||| Sbjct 1984 -GATACCATTGACAATGTGAAGGCAAAGATACAGGATAAGGAAGGCATGCCACCAGATCA 2042 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||| ||||| | | || | || |||||||| Sbjct 2043 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAA 2102 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || || |||||||| Sbjct 2103 TATCCAGAAAGAGTCTAC 2120 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 || |||||| | | |||| ||| ||||||||||||||||||| | || || |||||| Sbjct 1810 GACCAGCAGCGTTTGATTTTTGCTGGTAAACAGCTGGAGGACGGTAGGACTATTGCGGAC 1869 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || ||||| ||||||||||| || | || |||| ||| | || |||||| Sbjct 1870 TATAACATCCAAAAGGAGTCGACTCTCCATTTGGTCTTGCGTTT--GAGGGG 1919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397642425633502