Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq196472 118 2e-21 seq179153 105 1e-17 seq140002 105 1e-17 seq72314 105 1e-17 seq242921 87.8 3e-12 >seq196472 Length=12654 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || ||||| || ||||||||||| || | || || || | | Sbjct 7701 TGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCACGG 7760 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || ||| ||||| ||| ||| ||||| |||||||| || |||| Sbjct 7761 ACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAAC 7820 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || ||||| || ||| | || | |||||||||||| Sbjct 7821 AAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAATA 7880 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || |||| |||| Sbjct 7881 TTCAAAAGGAGTCAACGCTCCACCTAGT 7908 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || ||||| || || || || | || || || | || Sbjct 8157 TGCAGATCTTTGTGAAGACTTTGACAGGGAAGACGATCACGTTGGAGGTGGAGAGTTCCG 8216 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || ||||| ||| || || || ||||| ||||| | Sbjct 8217 ATACCATTGATAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATCCCACCAGATCAGC 8276 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||||||||| ||||||||||| ||| ||||| | | |||||||| | Sbjct 8277 AAAGATTGATTTTTGCAGGGAAACAATTAGAAGATGGAAGAACTCTGGCTGATTATAACA 8336 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || ||||| |||| |||| Sbjct 8337 TTCAAAAGGAGTCGACACTCCACCTAGT 8364 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 7929 TGCAAATTTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 7988 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || |||||| ||| || || || || ||||| ||||| | Sbjct 7989 ACACGATAGACAATGTTAAGGCTAAAATTCAAGACAAGGAGGGTATCCCACCGGATCAGC 8048 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || |||||||| ||| |||| | | |||||||| | Sbjct 8049 AGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGACGAACTCTGGCTGATTATAACA 8108 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 8109 TCCAGAAGGAATCCAC 8124 >seq179153 Length=7583 Score = 105 bits (116), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||| | |||||||| || ||||| | || || || | Sbjct 4754 TGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCGG 4695 Query 146092 ATACTATTCA-AAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 | || ||| | |||||| |||| ||||| ||| || ||||| ||||| || |||||| Sbjct 4694 ACACCATTGATAAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 4635 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| | |||||||| || |||||| | || ||| | |||| | | ||||| ||| Sbjct 4634 CAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTACAAT 4575 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || || || ||||| ||| ||||| | || || || | | |||||| Sbjct 4574 ATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGT 4527 >seq140002 Length=100703 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || |||||||| || ||||| |||| || || | | Sbjct 55562 TGCAGATCTTTGTAAAAACTTTGACAGGAAAGACTATTACCCTTGAGGTTGAGAGTTCTG 55621 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| |||||| || ||||||||||||||| || ||||| | Sbjct 55622 ATACAATTGACAATGTCAAAGCTAAAATCCAGGATAAAGAAGGCATTCCTCCAGATCAGC 55681 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || || ||| | || ||| | | || | | || || |||| Sbjct 55682 AGAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACAATA 55741 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || || ||||| ||| ||||| Sbjct 55742 TTCAGAAGGAATCCACTCTCCAT 55764 >seq72314 Length=63918 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || ||||| ||||||||||| || | || || || | Sbjct 55459 TGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTCGG 55518 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || ||||| ||| ||| |||||||||||||| ||||| | Sbjct 55519 ACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCAGC 55578 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || ||||||||||| |||||||| || ||| || || | | || ||||| | Sbjct 55579 AGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAACA 55638 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || || || |||| |||| Sbjct 55639 TTCAAAAGGAGTCAACACTCCACCTAGT 55666 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || ||||| ||| || || |||||||| || || Sbjct 55290 GATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATTCCACCAGACCAG 55349 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||| ||||||||||| |||||||| || ||| || || | ||||||||||| Sbjct 55350 CAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAAT 55409 Query 146211 ATACAAAAAGAATCGAC 146227 || ||||| ||||| || Sbjct 55410 ATTCAAAAGGAATCCAC 55426 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | ||||| ||||||||||| || || || | || || || | | | Sbjct 55687 TGCAAATCTTCGTTAAAACTTTAACAGGAAAGACCATCACACTGGAAGTTGAGAGCTCA- 55745 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| || || ||||| ||| || || |||||||| || || Sbjct 55746 GACACGATTGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGAATTCCACCGGACCAG 55805 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||| ||||| || ||||| || || ||| ||| || | | || || ||| Sbjct 55806 CAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCCGACTACAAT 55865 Query 146211 ATACAAAAAGAATCGACTATCCAT 146234 || || || || || || ||||| Sbjct 55866 ATCCAGAAGGAGTCTACGCTCCAT 55889 >seq242921 Length=127737 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| ||||| || ||||| || | || || ||| | | Sbjct 49792 TGCAGATCTTTGTGAAGACATTGACAGGGAAGACAATCACCTTGGAGGTCGAAAGTTCTG 49851 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| ||||||||| |||||||| ||||| | Sbjct 49852 ATACAATTGATAATGTGAAGGCGAAGATCCAAGATAAAGAAGGGATTCCACCGGATCAGC 49911 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| ||||| || | || ||| || || | | |||||||||| Sbjct 49912 AGCGATTGATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGGACCCTTGCTGATTATAATA 49971 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || | ||||| || | || | || ||||| Sbjct 49972 TCCAGAAGGAGTCCACACTGCATTTGGTGCTCCGTCTGAGGGGAGG 50017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783671127500560