Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq253918 93.3 2e-14 seq191101 93.3 2e-14 seq91392 93.3 2e-14 seq96764 89.7 2e-13 seq65454 89.7 2e-13 seq82002 84.2 8e-12 seq176443 82.4 3e-11 >seq253918 Length=155941 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38357 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38416 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 38417 CTGCTCTACCCCGC 38430 >seq191101 Length=17662 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 15122 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 15063 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 15062 CTGCTCTACCCCGC 15049 >seq91392 Length=128555 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 39282 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 39223 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 39222 CTGCTCTACCCCGC 39209 >seq96764 Length=468 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 || ||||| ||||||||||||| |||||| ||| ||||||||| |||||||||| ||| Sbjct 134 TTTCGGAGATAGGATTTGAACCCGTGGCCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 193 Query 50171 TGCTCTACTCCGCA 50184 |||||||| ||||| Sbjct 194 TGCTCTACCCCGCA 207 >seq65454 Length=4641 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 || ||||| ||||||||||||| |||||| ||| ||||||||| |||||||||| ||| Sbjct 4016 TTTCGGAGATAGGATTTGAACCCGTGGCCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 3957 Query 50171 TGCTCTACTCCGCA 50184 |||||||| ||||| Sbjct 3956 TGCTCTACCCCGCA 3943 >seq82002 Length=148167 Score = 84.2 bits (92), Expect = 8e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | |||||||||| || | |||| ||| ||||||||| | |||||||| || Sbjct 40598 GTTGCGGAGACAGGATTTGAACTCGTGACCTCAAGGTTATGAGCCTTGTGAGCTACCAAA 40539 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 40538 CTGCTCTACCCCGC 40525 >seq176443 Length=40650 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| ||||||||| || Sbjct 11304 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACAAAA 11245 Query 50170 CTGCTCTA 50177 |||||||| Sbjct 11244 CTGCTCTA 11237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181055616184116