Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq196472 98.7 1e-15 seq175354 95.1 1e-14 seq28647 95.1 1e-14 seq179153 89.7 5e-13 seq140002 87.8 2e-12 seq182928 86.0 6e-12 >seq196472 Length=12654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | ||| | || | || || || ||||| ||||||||||| Sbjct 7698 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAATCCGCA 7639 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || ||||||||||| || ||| |||||| |||||| ||||| || || Sbjct 7638 AGAGTCCGTCCA-TCCTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 7580 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||||| ||| | | || | |||||||| || || Sbjct 7579 AATACCTTCTTTGTCCTGGATTTTCGATTTAACATTGTCGATCGTGTCTGAACTCTCAAC 7520 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | |||||||| || | || ||||| || || ||||| Sbjct 7519 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 7472 >seq175354 Length=42077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || ||||||||||| || ||| ||| ||| || ||||| || ||| Sbjct 17507 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCA 17566 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | | ||| || ||||| || ||||| ||||| | || ||| ||| Sbjct 17567 GCAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTTGATCTTTACTTTA 17626 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || |||| ||| ||||||| || | ||||||||||| | || Sbjct 17627 ACATTGTCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 17686 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 17687 TTGACAAAGATCTGCAT 17703 >seq28647 Length=54725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 137186 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 137245 |||| || | |||||| || | ||| | ||| ||||| || || ||||| ||||| | Sbjct 9680 CTCCGCGAAGACGCAACACAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGCAA 9621 Query 137246 TTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 ||| |||| |||||||||||||| |||||||| || | | ||| || || ||||| Sbjct 9620 GTGT--TCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGG 9563 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTA 137362 || ||||| ||||| | | | ||||||||| | | || | ||||||| | || | Sbjct 9562 AATTCCTTCCTTGTC-TTGAATCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAA 9504 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATT 137406 |||| | || | ||||| || || | || || ||||| ||| Sbjct 9503 CTTCGAGTGTTATGGTCTTTCCAGTAAGGGTCTTGACGAAGATT 9460 >seq179153 Length=7583 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || | ||| | || ||||| || || || |||||||| Sbjct 4528 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4587 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | ||| |||| || ||||||||||| |||||| | || | | ||| ||||| |||| Sbjct 4588 AGTGT--TCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 4645 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC--TGTTCCACCGTGTCTGTGGGTTC 137360 | || ||||| ||||| | | ||||||||||| | | || | ||||| | | || Sbjct 4646 GAATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTC 4704 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || | ||||| || || | ||| || || || |||||||| Sbjct 4705 AACCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4755 >seq140002 Length=100703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 137255 |||| || ||||| | || ||||| || || ||||||||||| ||| | ||| || Sbjct 56003 CGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCT-AGTGTCCTTCC 55945 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || || || || |||||| | || || | ||||| || || || || ||||| || Sbjct 55944 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 55885 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 || ||||||| || | | || | ||||| | | || ||||||| ||| | Sbjct 55884 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 55825 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || |||||||| ||||| || || ||||||||| Sbjct 55824 AGTTTTCCCGGTCAAGGTTTTCACAAAGATTTGCATA 55788 >seq182928 Length=15200 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || ||||| || ||||||||||| ||| | | ||| ||| || ||||| || ||| Sbjct 4803 GTTGACTCTTTCTGAATGTTGTAATCTGTCAAT-TCCTCCCGTCCTCAAGTTGCTTCCCA 4745 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| ||||||| | ||||| || ||||| || ||||| ||||| || ||| ||| Sbjct 4744 GCAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGCTTTA 4685 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | || ||| ||| ||||||| || | ||||||||||| | || Sbjct 4684 ACATTGTCGATGGTATCTTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 4625 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 4624 TTGACAAAGATCTGCAT 4608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486993373557600