Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq196472 91.5 1e-13 seq188529 84.2 2e-11 >seq196472 Length=12654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCG 131986 ||||||| |||||||||||||| || | || | || || ||| ||||| ||||| || Sbjct 7667 TTGACTCCTTTTGAATGTTGTAATC-CGCAAGAGTCCGTCCATCCTCGAGTTGTTTTCCT 7609 Query 131987 GAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTC 132046 | | |||| | ||| ||||||||||| || || |||||||| || ||||| ||| Sbjct 7608 GCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTCGATTTA 7549 Query 132047 AACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 | | || | || || | ||| ||||||| || | || || ||||| ||||| Sbjct 7548 ACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTAAGAGTC 7489 Query 132107 TTTATGAAAATCTGCAT 132123 |||| || |||||||| Sbjct 7488 TTTACAAAGATCTGCAT 7472 >seq188529 Length=122975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| || ||||| || | ||| ||| ||| || ||||| ||||| | | Sbjct 109449 GATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGCTTACCAGCA 109390 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| |||||||| || || ||||||||||| |||||| |||| Sbjct 109389 AATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTGGCCTTCACG 109330 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||||||| | || | || || || |||| |||||| Sbjct 109329 TTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGTCAAAGTTTTG 109270 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 109269 ACAAAAATCTGCAT 109256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475098447966480