Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq146937 111 1e-19 seq175354 89.7 5e-13 seq72314 89.7 5e-13 seq196472 86.0 6e-12 seq184254 84.2 2e-11 seq179153 84.2 2e-11 >seq146937 Length=209544 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||||| ||| | ||||| | ||||||||| | | Sbjct 83168 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83227 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || || ||| || || ||||| || || || || ||| Sbjct 83228 GACACTATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 83287 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||| | |||| || ||| || ||||||||||| | |||| | ||| |||||||| Sbjct 83288 CAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCT-AGCTGATTACAA 83346 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || ||||| ||| |||| || || Sbjct 83347 CATCCAGAAGGAATCGACCCTTCACTTGGT 83376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||| || ||| | ||||| | ||||||||| | | Sbjct 83396 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83455 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||| ||||| ||||| || || || || ||| Sbjct 83456 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 83515 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||| | |||| | || || ||| | ||||||| || | | ||| |||||||| Sbjct 83516 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTT-AGCTGATTACAA 83574 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| || || || || |||| || ||| Sbjct 83575 TATTCAGAAGGAGTCGACTCTTCACTTGGTG 83605 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||||||| | ||||| | || || ||| | | Sbjct 82940 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACAATCACCCTTGAGGTTGAAAGCTCC 82999 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| || ||||| || || || || || ||| Sbjct 83000 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 83059 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||| || || |||||||| | ||||| | ||| ||||| Sbjct 83060 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTAGAACCCTAGCCGACTACAAC 83119 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || || ||||| ||| |||| || ||| Sbjct 83120 ATCCAGAAGGAATCGACCCTTCACTTGGTG 83149 >seq175354 Length=42077 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | |||||||| | | ||| | | ||||| | Sbjct 17931 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTAGTACGCTTAAGGTCGAGAACTCA 17872 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || ||| || |||||||||||||| || || ||||| Sbjct 17871 GACACCATTGACAATGTCAAGGTAAAGATCCAGGATAAAGAGGGTATTCCTCCTGATCAA 17812 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | ||||| ||||| ||||||||||||| | | || ||||| Sbjct 17811 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGATAGAACTCTTGCTGACTACAAC 17752 Query 25355 ATTCAAAAAGAATCCACCATTC 25376 || || ||||| |||||| ||| Sbjct 17751 ATCCAGAAAGAGTCCACCCTTC 17730 >seq72314 Length=63918 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || || || |||||||| | || || || Sbjct 55229 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 55288 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || || || ||||| |||||||| || || || || Sbjct 55289 TGATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATTCCACCAGACCA 55348 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| |||| | || |||||| | ||||||| || | | || ||||| || Sbjct 55349 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAA 55408 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||||||| ||||||||| |||| Sbjct 55409 TATTCAAAAGGAATCCACCCTTCA 55432 >seq196472 Length=12654 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || |||||| | ||||| | ||||| || || Sbjct 7700 ATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCACG 7759 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| |||||| ||||| || ||||| || || || || Sbjct 7760 GACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAA 7819 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || |||| | || || ||| | ||||||| | | | | ||||| ||| Sbjct 7820 CAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAAT 7879 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| || || || Sbjct 7880 ATTCAAAAGGAGTCAAC 7896 >seq184254 Length=183585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 25263 TTACC--GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 ||||| |||||||| || ||||| || |||||||| ||||| |||| | || ||||| Sbjct 180569 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 180628 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 | ||||||| | | | | |||||||||||||| |||||||| || |||| | Sbjct 180629 GTTGGAAGATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCT 180688 Query 25381 AGTGTTAAGATTGAGAGGAGGAA-AATGATCA 25411 || || || | || ||||||| ||||||| Sbjct 180689 CGTTTTGAGGCTCAGGGGAGGAACTATGATCA 180720 >seq179153 Length=7583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222 |||||| ||| |||||| | ||||| || ||| | || ||||| | || || |||| Sbjct 4766 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAG 4708 Query 25223 GTCGAAGCCAACGATACTATCGAGCAA-GTAAAACAAAAAATTACCGATAAAGAGGGTAT 25281 || || | || || || || || || ||| ||||||| || || || || || Sbjct 4707 GTTGAGAGCTCGGACACCATTGATAAATGTTAAAACAAAAATTCAAGACAAGGAAGGAAT 4648 Query 25282 ACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGT 25341 || || ||||| ||||| | |||| | || ||||||||||| |||| | ||| | Sbjct 4647 TCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACT 4588 Query 25342 CAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||||||||| || || |||||||| | ||| | ||||| Sbjct 4587 TGCTGATTACAATATCCAGAAGGAATCCACTCTCCATCTTGTGTT 4543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443681681501760