Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq146937 111 1e-19
seq175354 89.7 5e-13
seq72314 89.7 5e-13
seq196472 86.0 6e-12
seq184254 84.2 2e-11
seq179153 84.2 2e-11
>seq146937
Length=209544
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| ||||||| ||| | ||||| | ||||||||| | |
Sbjct 83168 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83227
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| |||||||| | || || || ||| || || ||||| || || || || |||
Sbjct 83228 GACACTATCGACAACGTTAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 83287
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353
||||| | |||| || ||| || ||||||||||| | |||| | ||| ||||||||
Sbjct 83288 CAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCT-AGCTGATTACAA 83346
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| || || ||||| ||| |||| || ||
Sbjct 83347 CATCCAGAAGGAATCGACCCTTCACTTGGT 83376
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||| || ||| | ||||| | ||||||||| | |
Sbjct 83396 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83455
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| ||||| || | || || ||||| ||||| ||||| || || || || |||
Sbjct 83456 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 83515
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353
||||| | |||| | || || ||| | ||||||| || | | ||| ||||||||
Sbjct 83516 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTT-AGCTGATTACAA 83574
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||| || || || || |||| || |||
Sbjct 83575 TATTCAGAAGGAGTCGACTCTTCACTTGGTG 83605
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || ||||| ||||||||||| | ||||| | || || ||| | |
Sbjct 82940 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACAATCACCCTTGAGGTTGAAAGCTCC 82999
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| ||||| || | || || || ||| || ||||| || || || || || |||
Sbjct 83000 GACACTATTGACAACGTTAAGGCTAAGATTCAGGACAAAGAAGGAATCCCACCGGACCAG 83059
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| || | || | || ||| || || |||||||| | ||||| | ||| |||||
Sbjct 83060 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTAGAACCCTAGCCGACTACAAC 83119
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|| || || ||||| ||| |||| || |||
Sbjct 83120 ATCCAGAAGGAATCGACCCTTCACTTGGTG 83149
>seq175354
Length=42077
Score = 89.7 bits (98), Expect = 5e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| | |||||||| | | ||| | | ||||| |
Sbjct 17931 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTAGTACGCTTAAGGTCGAGAACTCA 17872
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || || ||| || |||||||||||||| || || |||||
Sbjct 17871 GACACCATTGACAATGTCAAGGTAAAGATCCAGGATAAAGAGGGTATTCCTCCTGATCAA 17812
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| | |||| | ||||| ||||| ||||||||||||| | | || |||||
Sbjct 17811 CAAAGGTTGATTTTTGCTGGCAAGCAACTTGAAGATGATAGAACTCTTGCTGACTACAAC 17752
Query 25355 ATTCAAAAAGAATCCACCATTC 25376
|| || ||||| |||||| |||
Sbjct 17751 ATCCAGAAAGAGTCCACCCTTC 17730
>seq72314
Length=63918
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | ||||| || || || || || || |||||||| | || || ||
Sbjct 55229 CATGCAGATCTTTGTGAAGACGTTGACGGGGAAGACGATCACGTTGGAGGTGGAGAGTTC 55288
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || || | || || || || ||||| |||||||| || || || ||
Sbjct 55289 TGATACCATTGACAATGTGAAGGCCAAGATACAGGATAAGGAGGGTATTCCACCAGACCA 55348
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| ||||| |||| | || |||||| | ||||||| || | | || ||||| ||
Sbjct 55349 GCAGAGACTGATTTTTGCAGGGAAACAATTGGAAGATGGAAGGACTCTCGCAGATTATAA 55408
Query 25354 TATTCAAAAAGAATCCACCATTCA 25377
||||||||| ||||||||| ||||
Sbjct 55409 TATTCAAAAGGAATCCACCCTTCA 55432
>seq196472
Length=12654
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || ||||| || |||||| | ||||| | ||||| || ||
Sbjct 7700 ATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCACG 7759
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| ||||| || | || ||| |||||| ||||| || ||||| || || || ||
Sbjct 7760 GACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCAA 7819
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| || |||| | || || ||| | ||||||| | | | | ||||| |||
Sbjct 7820 CAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAAT 7879
Query 25355 ATTCAAAAAGAATCCAC 25371
|||||||| || || ||
Sbjct 7880 ATTCAAAAGGAGTCAAC 7896
>seq184254
Length=183585
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/152 (73%), Gaps = 3/152 (2%)
Strand=Plus/Plus
Query 25263 TTACC--GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320
||||| |||||||| || ||||| || |||||||| ||||| |||| | || |||||
Sbjct 180569 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 180628
Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380
| ||||||| | | | | |||||||||||||| |||||||| || |||| |
Sbjct 180629 GTTGGAAGATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCT 180688
Query 25381 AGTGTTAAGATTGAGAGGAGGAA-AATGATCA 25411
|| || || | || ||||||| |||||||
Sbjct 180689 CGTTTTGAGGCTCAGGGGAGGAACTATGATCA 180720
>seq179153
Length=7583
Score = 84.2 bits (92), Expect = 2e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 25163 CAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAA 25222
|||||| ||| |||||| | ||||| || ||| | || ||||| | || || ||||
Sbjct 4766 CAATTATACAG-ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAG 4708
Query 25223 GTCGAAGCCAACGATACTATCGAGCAA-GTAAAACAAAAAATTACCGATAAAGAGGGTAT 25281
|| || | || || || || || || ||| ||||||| || || || || ||
Sbjct 4707 GTTGAGAGCTCGGACACCATTGATAAATGTTAAAACAAAAATTCAAGACAAGGAAGGAAT 4648
Query 25282 ACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGT 25341
|| || ||||| ||||| | |||| | || ||||||||||| |||| | ||| |
Sbjct 4647 TCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACT 4588
Query 25342 CAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
||||||||||| || || |||||||| | ||| | |||||
Sbjct 4587 TGCTGATTACAATATCCAGAAGGAATCCACTCTCCATCTTGTGTT 4543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 443681681501760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |