Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq196472 84.2 2e-11
seq198291 82.4 6e-11
>seq196472
Length=12654
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCC 106316
||||||||| |||||||| ||||||||||| || || || || ||||| ||| | |
Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758
Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376
|| | || ||| | || ||| |||||| || || ||||| | || ||
Sbjct 7759 GGACA--CTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGAC 7816
Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436
||||||||||| |||| ||| || || ||||| |||||| ||| ||| |||||
Sbjct 7817 CAACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTAT 7876
Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468
|| || ||||| || || || || || ||||
Sbjct 7877 AATATTCAAAAGGAGTCAACGCTCCACCTAGT 7908
>seq198291
Length=74715
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412
||||||||||| | || |||||| || ||| | |||| ||| || ||||| || |||
Sbjct 28545 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 28604
Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472
||| | |||| ||| |||||||| || || |||||||| ||||| || | || ||
Sbjct 28605 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTA 28664
Query 106473 AGGTTACGAGGAGGA 106487
||| | | ||||||
Sbjct 28665 AGGCTCAGGGGAGGA 28679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 401084540510144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |