Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq196472 84.2 2e-11 seq198291 82.4 6e-11 >seq196472 Length=12654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCC 106316 ||||||||| |||||||| ||||||||||| || || || || ||||| ||| | | Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || | || ||| | || ||| |||||| || || ||||| | || || Sbjct 7759 GGACA--CTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGAC 7816 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||||||||| |||| ||| || || ||||| |||||| ||| ||| ||||| Sbjct 7817 CAACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTAT 7876 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||| || || || || || |||| Sbjct 7877 AATATTCAAAAGGAGTCAACGCTCCACCTAGT 7908 >seq198291 Length=74715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || |||||| || ||| | |||| ||| || ||||| || ||| Sbjct 28545 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 28604 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| | |||| ||| |||||||| || || |||||||| ||||| || | || || Sbjct 28605 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCACCTGGTTTTA 28664 Query 106473 AGGTTACGAGGAGGA 106487 ||| | | |||||| Sbjct 28665 AGGCTCAGGGGAGGA 28679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401084540510144