Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq118536 174 2e-37 >seq118536 Length=58152 Score = 174 bits (192), Expect = 2e-37 Identities = 357/523 (68%), Gaps = 12/523 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | || |||||||||||| |||||| | || |||| || Sbjct 24862 TGTTCCCAATTCAATACCCACAAATTTGGGAAATGTACAAAAAAGCCTTAG-CCTCTTTC 24920 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| || || || ||||| | |||| || ||||||| | || | | | Sbjct 24921 TGGACTGCTGAAGAAGTCGATTTATCTTCCGATACCCGTCACTGGGAAACCCTAACCCCC 24980 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 | || | |||||||||| |||||||| ||||||| |||||||| || |||||||| Sbjct 24981 GGTGAAAGGCATTTCATCACTCACGTCCTTGCCTTTT-TCGCCGCCTCAGACGGCATCGT 25039 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA-TTGCCAGAGGCACGTTTGT 1455991 || ||||| ||||| | || |||||||| |||||| ||||| ||||| ||| | Sbjct 25040 TTTAGAAAACCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCC-GAGGCGCGTGCTT 25098 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||| ||||| || |||||||||||||| || | ||| || || | | Sbjct 25099 TCTACGGCTTCCAAATCGCGATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAG 25158 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| |||||||| | | ||| || | | || ||||| | || || | | Sbjct 25159 AGTCGTACATCAAGGACTCTGACGAAAAAAGCAGATTATTCCGCGCAGTTGAGACTATCC 25218 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | || ||| ||||| | ||||| | |||||| || || ||| | Sbjct 25219 CCTGTGTTGAGAAGAAGGCGAAGTGGGCCCTACGTTGGATC------GATGGTTCCGAAA 25272 Query 1456172 C-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 | ||||| ||||| | || | |||||| | || || || || |||||||| || || | Sbjct 25273 CATTTGCGGAGCGTTTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCT 25332 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 |||| || || || ||| | || ||||| || | ||||| || Sbjct 25333 TCTGTGCTATATTCTGGTTAAAAAAGCGGGGGTTAATGCCTGG 25375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7153320342198716