Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 167 3e-36
seq175890 122 1e-22
seq178632 105 9e-18
seq44392 105 9e-18
>seq118536
Length=58152
Score = 167 bits (184), Expect = 3e-36
Identities = 570/876 (65%), Gaps = 18/876 (2%)
Strand=Plus/Minus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
|| || || || ||||| | ||||| || |||||||| || |||| || ||
Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
||||| ||||||||||||| ||||| || || | | | || || | | |
Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
|||||||| || || ||||| |||||| | |||||| || | ||||||||| | ||
Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
| || || || || | |||||| |||| || || || || |||| | ||
Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487
Query 39566 GATGTTACTACCTCATCACTCGG-TGGATGC--AATAAATGTTTAAACATTAAGCAGGCG 39622
| ||| || ||| | | | | | || ||| | || || | || |||
Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCA---AACAAGCG 25430
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
|| ||||| || | || || || || |||||| ||||| || || || | |||||||
Sbjct 25429 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 25370
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741
|||| || |||||||| | ||| ||||| ||| || ||| | ||||| || || || ||
Sbjct 25369 ATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAAAAAAATACC 25311
Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGTATCCA 39798
||| || ||||| ||||| | | ||| || || | || || | || |||||
Sbjct 25310 TTCCACACAAGCAAAGGCAACCAAACGCTC--CGCAAAT-GTTTCGGAACCATCGATCCA 25254
Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858
| ||||| | || ||||||| ||||| || || || || | || || |
Sbjct 25253 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA- 25195
Query 39859 ATAATG--TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916
|| || |||||| ||| || || | || | |||| | |||||| ||||| ||
Sbjct 25194 ATC-TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCG 25136
Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976
|| ||||||||||||||||| || || || ||||| ||| | || || | || |||
Sbjct 25135 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGG 25076
Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036
|| ||| || ||| | || | ||||| || || || || ||||| |||
Sbjct 25075 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 25016
Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096
|| || | || || | || |||| ||||| |||| || | | | ||||| | |
Sbjct 25015 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGG 24956
Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156
|||| |||| ||| ||||||||||| ||||| || || || || |||||||||
Sbjct 24955 GTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 24896
Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192
|| | ||| || | | ||||| ||||| || |||
Sbjct 24895 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 24860
>seq175890
Length=85540
Score = 122 bits (134), Expect = 1e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | |||| ||||||| |||| | || | |||||||||| ||| |||
Sbjct 20121 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATCGGAACAATTCCA 20180
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | ||||| |||||| ||||||||| || | | |||||||| || ||||
Sbjct 20181 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGAACAGAT 20240
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || |||||||| || ||| || | |||||| || | |||||||||||
Sbjct 20241 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 20300
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || ||||| ||| ||||| | ||| || ||||||
Sbjct 20301 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 20342
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || ||
Sbjct 20438 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 20497
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| || | || || ||||| ||||| || || ||||| | | || | |||||
Sbjct 20498 ATAAGTCTTGATGGCAGATTCAATATCATCCTTGTGGATTCCAACAGAAACTCTCATCAG 20557
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
|||||| || || | |||||| || ||| || || || ||||| || |||||
Sbjct 20558 CATATGTTGTGGCCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCAG 20617
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
|||||| || ||||| || | || |||||| || || || || ||
Sbjct 20618 AGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 20665
>seq178632
Length=191222
Score = 105 bits (116), Expect = 9e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||||||||| |||||||| |||||||||||| || ||| | || ||
Sbjct 179094 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 179035
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||||||| || || ||||| ||||| || || || || | | || | |||||
Sbjct 179034 ATATGTTTTGATGGCAGATTCAATATCATCCTTGTGTATCCCAACAGATACTCTCATCAG 178975
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | |||||| |||| || || || ||||| || | || ||
Sbjct 178974 CATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAAG 178915
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || ||||| || | || ||| ||||| || || || ||
Sbjct 178914 GGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCTGTCATATATGAT 178867
Score = 100 bits (110), Expect = 4e-16
Identities = 166/240 (69%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792
|| ||| || |||| ||||| || || | ||||| ||||||| ||| | || | |
Sbjct 179543 ACACCCTTTCTTTTACCACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACGCGC 179484
Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852
||||| |||| ||| ||||| ||| | |||||||||||| |||| ||||| || | ||
Sbjct 179483 AGCATAGGAACAATTCCATTTGATGTCCCATTTGTTCCACAAATGTAACTCCCAGTAGCA 179424
Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912
|| || || | ||| | || ||||| || || ||| || | ||||||
Sbjct 179423 CGTATGTTGTGCACAGAAACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCC 179364
Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
|| | || |||||||||||||| || || || ||| ||||| | || || ||||||
Sbjct 179363 TTAAGAGTATCATATATACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 179304
>seq44392
Length=18013
Score = 105 bits (116), Expect = 9e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| |||||||||||||| |||||||| |||||||||||| || ||| | || ||
Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
|| |||| || || ||||| ||||| || || || || | | || | |||||
Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTGTGTATCCCAACAGATACTCTCATCAG 9424
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || || || | |||||| |||| | || || || ||||| || | || |
Sbjct 9425 CATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAA 9484
Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| || |||||||| | || ||| ||||| || || || ||
Sbjct 9485 GGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGTCATATATGAT 9532
Score = 89.7 bits (98), Expect = 7e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| |||
Sbjct 8881 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 8940
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| ||| ||||| || | || | || || | |||
Sbjct 8941 TTCGATGTCCCATTTGTTCCATGAATGTAACTCCCAGTAGCACATATGTTGTGCACAGAA 9000
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| || ||||| || || ||| || | |||||| || | || |||||||||
Sbjct 9001 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATA 9060
Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972
||||| || || || ||| ||||| | || || ||||||
Sbjct 9061 CCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 9102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684728568641520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |