Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq118536 167 3e-36 seq175890 122 1e-22 seq178632 105 9e-18 seq44392 105 9e-18 >seq118536 Length=58152 Score = 167 bits (184), Expect = 3e-36 Identities = 570/876 (65%), Gaps = 18/876 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || || || ||||| | ||||| || |||||||| || |||| || || Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||||||||| ||||| || || | | | || || | | | Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| || || ||||| |||||| | |||||| || | ||||||||| | || Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || || || || | |||||| |||| || || || || |||| | || Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487 Query 39566 GATGTTACTACCTCATCACTCGG-TGGATGC--AATAAATGTTTAAACATTAAGCAGGCG 39622 | ||| || ||| | | | | | || ||| | || || | || ||| Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCA---AACAAGCG 25430 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||||| || | || || || || |||||| ||||| || || || | ||||||| Sbjct 25429 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 25370 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCC 39741 |||| || |||||||| | ||| ||||| ||| || ||| | ||||| || || || || Sbjct 25369 ATTAACCCCCGCTTTTTTAACCAGAATATAGCA-CAGAAGCTTCCAGAGAAAAAAATACC 25311 Query 39742 TTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGTATCCA 39798 ||| || ||||| ||||| | | ||| || || | || || | || ||||| Sbjct 25310 TTCCACACAAGCAAAGGCAACCAAACGCTC--CGCAAAT-GTTTCGGAACCATCGATCCA 25254 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| | || ||||||| ||||| || || || || | || || | Sbjct 25253 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA- 25195 Query 39859 ATAATG--TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || || |||||| ||| || || | || | |||| | |||||| ||||| || Sbjct 25194 ATC-TGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCG 25136 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 || ||||||||||||||||| || || || ||||| ||| | || || | || ||| Sbjct 25135 GAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGG 25076 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 || ||| || ||| | || | ||||| || || || || ||||| ||| Sbjct 25075 ACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAA 25016 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || | || || | || |||| ||||| |||| || | | | ||||| | | Sbjct 25015 AAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGG 24956 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 |||| |||| ||| ||||||||||| ||||| || || || || ||||||||| Sbjct 24955 GTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTAC 24896 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 || | ||| || | | ||||| ||||| || ||| Sbjct 24895 ATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 24860 >seq175890 Length=85540 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||| ||| ||| Sbjct 20121 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATCGGAACAATTCCA 20180 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||| |||||| ||||||||| || | | |||||||| || |||| Sbjct 20181 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGAACAGAT 20240 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 20241 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 20300 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||| ||| ||||| | ||| || |||||| Sbjct 20301 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 20342 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| ||| ||| | || || Sbjct 20438 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 20497 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || || ||||| | | || | ||||| Sbjct 20498 ATAAGTCTTGATGGCAGATTCAATATCATCCTTGTGGATTCCAACAGAAACTCTCATCAG 20557 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| || ||| || || || ||||| || ||||| Sbjct 20558 CATATGTTGTGGCCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCAG 20617 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||| || ||||| || | || |||||| || || || || || Sbjct 20618 AGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 20665 >seq178632 Length=191222 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||||||||| |||||||| |||||||||||| || ||| | || || Sbjct 179094 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 179035 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||||| || || ||||| ||||| || || || || | | || | ||||| Sbjct 179034 ATATGTTTTGATGGCAGATTCAATATCATCCTTGTGTATCCCAACAGATACTCTCATCAG 178975 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| || || || ||||| || | || || Sbjct 178974 CATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAAG 178915 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||| ||||| || || || || Sbjct 178914 GGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCTGTCATATATGAT 178867 Score = 100 bits (110), Expect = 4e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 69733 ACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTC 69792 || ||| || |||| ||||| || || | ||||| ||||||| ||| | || | | Sbjct 179543 ACACCCTTTCTTTTACCACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACGCGC 179484 Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 ||||| |||| ||| ||||| ||| | |||||||||||| |||| ||||| || | || Sbjct 179483 AGCATAGGAACAATTCCATTTGATGTCCCATTTGTTCCACAAATGTAACTCCCAGTAGCA 179424 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || || || | ||| | || ||||| || || ||| || | |||||| Sbjct 179423 CGTATGTTGTGCACAGAAACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCC 179364 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || | || |||||||||||||| || || || ||| ||||| | || || |||||| Sbjct 179363 TTAAGAGTATCATATATACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 179304 >seq44392 Length=18013 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||||||||| |||||||| |||||||||||| || ||| | || || Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || |||| || || ||||| ||||| || || || || | | || | ||||| Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTGTGTATCCCAACAGATACTCTCATCAG 9424 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| |||| | || || || ||||| || | || | Sbjct 9425 CATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAAA 9484 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || ||| ||||| || || || || Sbjct 9485 GGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGTCATATATGAT 9532 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | ||||| ||||||| ||| | || | |||||| |||| ||| ||| Sbjct 8881 CCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGCAGCATAGGAACAATTCCA 8940 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||| ||||| || | || | || || | ||| Sbjct 8941 TTCGATGTCCCATTTGTTCCATGAATGTAACTCCCAGTAGCACATATGTTGTGCACAGAA 9000 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || ||||||||| Sbjct 9001 ACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATA 9060 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || || || ||| ||||| | || || |||||| Sbjct 9061 CCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 9102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684728568641520