Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq224189 105 6e-18 seq146937 84.2 2e-11 >seq224189 Length=50442 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | || || || || || || ||||| || ||| ||| || | || || Sbjct 16419 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTT-CGACCATCCTC 16477 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||| |||||| ||||||| ||||| || ||||| || | || || || || Sbjct 16478 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 16537 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | || | ||||| | || ||| || || || || || | || Sbjct 16538 GATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTT 16597 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| |||||||| ||||| ||||| Sbjct 16598 ACCCGTCAGGGTTTTCACGAAGATCTGCAT 16627 >seq146937 Length=209544 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| | | | | |||||||| Sbjct 83148 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTACCGTCTTCG 83089 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || | | ||| || ||||| || | || ||||| || Sbjct 83088 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCTTTGTCCTGA 83029 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | |||||| | | |||||| || || || || | ||| Sbjct 83028 ATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATTGTTTTT 82969 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||| ||||| Sbjct 82968 CCGGTTAGGGTTTTCACGAAGATCTGCAT 82940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423619387116816