Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq208208 116 5e-21 seq162102 111 2e-19 seq207449 98.7 1e-15 seq39436 91.5 2e-13 >seq208208 Length=133897 Score = 116 bits (128), Expect = 5e-21 Identities = 306/460 (67%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 37778 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 37719 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || |||||||| || | | Sbjct 37718 CCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--CCTC 37661 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 37660 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 37601 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || |||||||| || | ||| || |||||||||| Sbjct 37600 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCGCGGACTCGAGAGGCTCCTACACCAACAA 37541 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| ||||| | || | || | || || ||||| ||| | |||||| || Sbjct 37540 ACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 37482 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || ||||| || || ||||| || ||| | ||||| | ||| Sbjct 37481 ATTGCCTTTGCTAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 37422 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | ||||| | || | |||||||| | ||| | ||| || || | ||| Sbjct 37421 GGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACTACCTC 37363 Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||| ||| | || | || |||||||| Sbjct 37362 CATAAAATCTTGTTTTGCCTCATCTACACCAGCAACATCA 37323 >seq162102 Length=94307 Score = 111 bits (122), Expect = 2e-19 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| | || || ||||| | || | |||||| || || | |||||| || || Sbjct 31633 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31574 Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 ||| || | | ||||| | || || ||| |||||||| || ||||| | ||| || Sbjct 31573 AATGACAATGACTCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTGAGAAGTTGGTT 31517 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 || ||| || ||||| ||||||||| | | ||||| | | |||| | || || Sbjct 31516 AAGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAAC 31457 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 ||||||||||||||||| ||||| | ||| ||| ||||| || | | || | Sbjct 31456 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAA 31397 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || | ||| || || |||||||||||||||||||| || || | || ||||| Sbjct 31396 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAACTCTGAACCAGAGAG 31337 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 | ||| || || | || ||| || ||||| || || || | ||||| || || Sbjct 31336 AGATAAGAACGGAACCTCTGCTTCTCCGGCGATCGCCTTAGCTAGCAATGTCTTCCCTGT 31277 Query 11809 ACCTGG 11814 ||||| Sbjct 31276 CCCTGG 31271 >seq207449 Length=20620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 193/282 (68%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || ||||||||||||||| | Sbjct 9401 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 9456 Query 11600 ATACCACCA-GCACTGCG-----TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| ||| || |||| |||| | || || ||||||||||||||||| || ||| Sbjct 9457 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 9514 Query 11654 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 ||||| || | ||| | || | ||||| | ||| | || || || ||||| Sbjct 9515 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 9573 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||| ||||||| ||| ||||| | || || | || || ||||| ||| || || Sbjct 9574 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTC 9633 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | |||| || | |||||||| || ||||| || Sbjct 9634 ACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 9675 >seq39436 Length=99557 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346 ||| |||||||||| | |||||||||||||||||||||| |||| ||||||||||| ||| Sbjct 30694 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACGACCCGGGTTCAAATCCCGGT 30635 Query 145347 AGGAGCTT 145354 |||| ||| Sbjct 30634 AGGACCTT 30627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626038642132800