Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq208208 116 5e-21
seq162102 111 2e-19
seq207449 98.7 1e-15
seq39436 91.5 2e-13
>seq208208
Length=133897
Score = 116 bits (128), Expect = 5e-21
Identities = 306/460 (67%), Gaps = 8/460 (2%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542
||||| ||||| | ||||| || ||||||| ||| | || ||||| | || ||
Sbjct 37778 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 37719
Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602
|||||||| || || | || ||| || | || ||||| || |||||||| || | |
Sbjct 37718 CCATCCATTTCCGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTCCCT--CCTC 37661
Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660
| | |||| | | |||| || || |||||||| ||||||| || ||||| || |
Sbjct 37660 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 37601
Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720
| |||||| ||| | | || |||||||| || | ||| || ||||||||||
Sbjct 37600 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCGCGGACTCGAGAGGCTCCTACACCAACAA 37541
Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779
||||||| ||||| | || | || | || || ||||| ||| | |||||| ||
Sbjct 37540 ACATCTCAACAAATTCTGAACCTGA-AATTGAGAAAAATGGAACACCCGCTTCACCAGCA 37482
Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839
|| || || || ||||| || || ||||| || ||| | ||||| | |||
Sbjct 37481 ATTGCCTTTGCTAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 37422
Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898
|| || | | | ||||| | || | |||||||| | ||| | ||| || || | |||
Sbjct 37421 GGAATACGAGCCCCCACTGCGGTAA-ACCTCTCGGGCTTCTTCAAAAATTCTACTACCTC 37363
Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938
|| || | ||| ||| | || | || ||||||||
Sbjct 37362 CATAAAATCTTGTTTTGCCTCATCTACACCAGCAACATCA 37323
>seq162102
Length=94307
Score = 111 bits (122), Expect = 2e-19
Identities = 246/366 (67%), Gaps = 6/366 (2%)
Strand=Plus/Minus
Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511
|||||| | || || ||||| | || | |||||| || || | |||||| || ||
Sbjct 31633 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31574
Query 11512 AATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568
||| || | | ||||| | || || ||| |||||||| || ||||| | ||| ||
Sbjct 31573 AATGACAATGACTCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTGAGAAGTTGGTT 31517
Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628
|| ||| || ||||| ||||||||| | | ||||| | | |||| | || ||
Sbjct 31516 AAGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAAC 31457
Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688
||||||||||||||||| ||||| | ||| ||| ||||| || | | || |
Sbjct 31456 AGCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAA 31397
Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748
|| | ||| || || |||||||||||||||||||| || || | || |||||
Sbjct 31396 GTCCCTAACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAACTCTGAACCAGAGAG 31337
Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808
| ||| || || | || ||| || ||||| || || || | ||||| || ||
Sbjct 31336 AGATAAGAACGGAACCTCTGCTTCTCCGGCGATCGCCTTAGCTAGCAATGTCTTCCCTGT 31277
Query 11809 ACCTGG 11814
|||||
Sbjct 31276 CCCTGG 31271
>seq207449
Length=20620
Score = 98.7 bits (108), Expect = 1e-15
Identities = 193/282 (68%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| |||||||| || || | | |||||||| || || ||||||||||||||| |
Sbjct 9401 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 9456
Query 11600 ATACCACCA-GCACTGCG-----TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653
||| ||| || |||| |||| | || || ||||||||||||||||| || |||
Sbjct 9457 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 9514
Query 11654 ATACATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
||||| || | ||| | || | ||||| | ||| | || || || |||||
Sbjct 9515 ATACAAGG-CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCAC 9573
Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772
||| ||||||| ||| ||||| | || || | || || ||||| ||| || ||
Sbjct 9574 ACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCTC 9633
Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
||| || | |||| || | |||||||| || ||||| ||
Sbjct 9634 ACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 9675
>seq39436
Length=99557
Score = 91.5 bits (100), Expect = 2e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 145287 TATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGT 145346
||| |||||||||| | |||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 30694 TATGGTGTAGTGGTTAGCACTTTGGACTTTGAATCCAACGACCCGGGTTCAAATCCCGGT 30635
Query 145347 AGGAGCTT 145354
|||| |||
Sbjct 30634 AGGACCTT 30627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626038642132800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |