Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq243809 87.8 2e-12
>seq243809
Length=169429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 190/280 (68%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| |||||||| ||||||||||||||||| || || || || | ||||||||| ||
Sbjct 56241 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 56184
Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269
| | ||| || |||| | ||| | || || || ||||| ||||| || || || ||
Sbjct 56183 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 56124
Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328
|| || | ||| || || || || | ||| | |||||| || || |||||
Sbjct 56123 CAAGG-CGCTTTCGACTTCGCCTTCTCGAACAAATCCCTCACTCTAGAAGCTCCAACACC 56065
Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388
||||||| ||| ||||| | | || | |||| || || || || || ||||||
Sbjct 56064 AACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTCACC 56005
Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
|| | |||| || | || ||||| || || || |||
Sbjct 56004 AGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGGT 55965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 616472302136080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |