Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq243809 132 6e-26
seq208208 131 2e-25
seq207449 105 8e-18
seq162102 95.1 1e-14
>seq243809
Length=169429
Score = 132 bits (146), Expect = 6e-26
Identities = 202/282 (72%), Gaps = 12/282 (4%)
Strand=Plus/Minus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
|||||||||||| || ||||| ||||| |||||||| || || | ||||||||| |
Sbjct 56241 AAAACCATCCATTTCAGTCAAGAGTTGATTAATAGTCTGCTCTCTCTCATCATTCCCA-- 56184
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | ||| || |||| | ||| ||||||| ||||||||||||||||| || || |||
Sbjct 56183 CCTCCCATTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACAATG 56124
Query 9731 CATGGTTGATTTTCGCGAGCGACTTCA--AAGAGATCCCGTACACGCTTG--GCGCCCAC 9786
|| || ||||| || |||| || | ||||| ||| || | || || ||
Sbjct 56123 CAAGGCGC--TTTCGACTTCGCCTTCTCGAACAAATCCCT--CACTCTAGAAGCTCCAAC 56068
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846
||||||||||| ||| ||||| | || || | |||| || || || ||| || |||
Sbjct 56067 ACCAACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGTACACCAGCTTC 56008
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||| |||| |||| || | ||| ||||| || ||||| ||
Sbjct 56007 ACCAGCAACTGCTCTAGCCAAAAGTGTCTTTCCTGTACCAGG 55966
>seq208208
Length=133897
Score = 131 bits (144), Expect = 2e-25
Identities = 274/399 (69%), Gaps = 12/399 (3%)
Strand=Plus/Minus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| || ||||| | || | || ||||| ||||| | ||||| || || ||
Sbjct 37809 ATCAAATCGCCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 37750
Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
| || | ||||| || ||| || | ||||||||||| || ||||| ||||||||
Sbjct 37749 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCCGTCAATAGTTGGTTC 37692
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701
| || ||||||| |||||||||| || | | | | |||| | | |||| || |
Sbjct 37691 AGGGTCTGTTCCCTTTCATCATTCCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 37634
Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760
| |||||||| ||||||| || || ||||| || ||||| | | | ||| |||
Sbjct 37633 CAGCATCAATTTCATCAACAAATACAATGCAGGGAGCATTTTCCTTGGCCTTCTTGAAA- 37575
Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820
||||| || || || ||| || ||||||||||||||||| ||||| | || | |||
Sbjct 37574 AGATCGCGGACTCGAGAGGCTCCTACACCAACAAACATCTCAACAAATTCTGAACCTGAA 37515
Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|||| || || || ||| | |||||| ||||| || || || || || || ||
Sbjct 37514 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAGGGTTTTCCC 37456
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918
||||| || ||| | || || ||||| ||||||
Sbjct 37455 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAAT 37417
>seq207449
Length=20620
Score = 105 bits (116), Expect = 8e-18
Identities = 195/283 (69%), Gaps = 16/283 (6%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| |||||||| |||||||| || || |||||||| || || | |||||||| |
Sbjct 9401 AACCCATCCATTTCTGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 9456
Query 9674 ATACCACCA-GCACTGCG-----TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727
||| ||| || |||| |||| |||| || ||||||||||||||||| || ||
Sbjct 9457 --ACCTCCAAGCCCTGCCCCTCTTTGCCTTCCAACAGCATCAATCTCATCAATAAACACA 9514
Query 9728 ATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785
|| || || ||||| || || ||||| | ||||| ||| | || ||||
Sbjct 9515 ATACAAGG--CGCTTTCGACTTCGCCTTCTCAAACAAATCCCTTACTCTAGAAGCTCCCA 9572
Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845
|||| ||||||| ||| ||||| | || || | |||| || || || ||| | |
Sbjct 9573 CACCCACAAACAACTCAACAAACTCTGATGCTGCACATGAGAAAAATGGCACACCTGCCT 9632
Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
|||| || | |||| || | ||| |||||||| ||||| ||
Sbjct 9633 CACCAGCTACTGCTCTAGCCAAAAGGGTCTTACCAGTACCAGG 9675
>seq162102
Length=94307
Score = 95.1 bits (104), Expect = 1e-14
Identities = 196/286 (69%), Gaps = 8/286 (3%)
Strand=Plus/Minus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| | || || ||||| | || | |||||| || ||| | ||| || || ||
Sbjct 31633 ATCAAATCTTCCAGGTCGAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 31574
Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643
||||||| | || |||||| | |||||||||||| || || | ||||||||||
Sbjct 31573 AATGACAATGACTCCAGTGTTTCC--AGTAAAACCATCCATTTCAGTGAGAAGTTGGTTA 31516
Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703
| || || || | ||||||||| | | ||||| | | |||| | || ||
Sbjct 31515 AGTGTCTGCTCTCTTTCATCATTTCCACCACCAATACCAGTTCCTCTTTGCCTCCCAACA 31456
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
||||||||||||||||| ||||| | || ||| ||||| || | || |
Sbjct 31455 GCATCAATCTCATCAATAAAGACTAAACAAGGTGAATTTTGCTTTGCCTTGTTGAATAAG 31396
Query 9764 TCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAA 9807
|||| || || || | || |||||||||||||||||||| || ||
Sbjct 31395 TCCC-TA-ACTCTAGAAGCTCCCACACCAACAAACATCTCAACGAA 31352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 581409544802320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |