Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 100 3e-16
>seq118536
Length=58152
Score = 100 bits (110), Expect = 3e-16
Identities = 282/428 (66%), Gaps = 4/428 (1%)
Strand=Plus/Plus
Query 59687 GCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAA 59746
||||||||||| ||||| ||||| ||||| || || || || || | |||||
Sbjct 24989 GCATTTCATCACTCACGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAA 25048
Query 59747 TATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806
||| | | || || || ||||| |||||||||| || | ||||||| |
Sbjct 25049 CCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTT 25108
Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865
|| ||| | || ||||||||||||| |||| || | | || ||
Sbjct 25109 CCAAATCGCG-ATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACA 25167
Query 59866 TCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924
||||||| | || || || || | | | ||||| || | ||||| |||| |||
Sbjct 25168 TCAAGGACTCTGACGAAAAAAGCAGAT-TATTCCGCGCAGTTGAGACTATCCCCTGTGTT 25226
Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGT 59984
| | || || | |||||| | | ||||| | | | | ||||||| | |||
Sbjct 25227 GAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGATGGTTCCGAAACATTTGCGGAGCGT 25286
Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044
| | || ||||| || |||||||| || || |||||||| ||||||||||| |||
Sbjct 25287 TTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTC 25346
Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104
||| | |||||||| || | ||||| || | | |||||| |||||| | ||||| ||
Sbjct 25347 TGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGG 25406
Query 60105 GACGAGGG 60112
||||| ||
Sbjct 25407 GACGAAGG 25414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546783795997920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |