Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq118536 100 3e-16 >seq118536 Length=58152 Score = 100 bits (110), Expect = 3e-16 Identities = 282/428 (66%), Gaps = 4/428 (1%) Strand=Plus/Plus Query 59687 GCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAA 59746 ||||||||||| ||||| ||||| ||||| || || || || || | ||||| Sbjct 24989 GCATTTCATCACTCACGTCCTTGCCTTTTTCGCCGCCTCAGACGGCATCGTTTTAGAAAA 25048 Query 59747 TATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTA 59806 ||| | | || || || ||||| |||||||||| || | ||||||| | Sbjct 25049 CCTAGCCGGAAGGTTCATGAAAGAAGTCCAAGTTGCCGAGGCGCGTGCTTTCTACGGCTT 25108 Query 59807 TCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGG 59865 || ||| | || ||||||||||||| |||| || | | || || Sbjct 25109 CCAAATCGCG-ATTGAAAACATCCACTCCGAGATGTACAGTCTGCTTCTAGAGTCGTACA 25167 Query 59866 TCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 ||||||| | || || || || | | | ||||| || | ||||| |||| ||| Sbjct 25168 TCAAGGACTCTGACGAAAAAAGCAGAT-TATTCCGCGCAGTTGAGACTATCCCCTGTGTT 25226 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGT 59984 | | || || | |||||| | | ||||| | | | | ||||||| | ||| Sbjct 25227 GAGAAGAAGGCGAAGTGGGCCCTACGTTGGATCGATGGTTCCGAAACATTTGCGGAGCGT 25286 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 | | || ||||| || |||||||| || || |||||||| ||||||||||| ||| Sbjct 25287 TTGGTTGCCTTTGCTTGTGTGGAAGGTATTTTTTTCTCTGGAAGCTTCTGTGCTATATTC 25346 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||| | |||||||| || | ||||| || | | |||||| |||||| | ||||| || Sbjct 25347 TGGTTAAAAAAGCGGGGGTTAATGCCTGGATTAACTTTCTCGAACGAGTTAATTTCAAGG 25406 Query 60105 GACGAGGG 60112 ||||| || Sbjct 25407 GACGAAGG 25414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546783795997920