Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq253918 82.4 2e-11 seq191101 82.4 2e-11 seq91392 82.4 2e-11 >seq253918 Length=155941 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 38429 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 38370 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 38369 CTGTCTCCGCAAC 38357 >seq191101 Length=17662 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 15050 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 15109 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 15110 CTGTCTCCGCAAC 15122 >seq91392 Length=128555 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 39210 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 39269 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 39270 CTGTCTCCGCAAC 39282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162034742830524