Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq196472 96.9 2e-15 seq179153 86.0 4e-12 seq242921 84.2 2e-11 seq140002 84.2 2e-11 seq224189 82.4 5e-11 seq146937 82.4 5e-11 >seq196472 Length=12654 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || ||| || | || || || || | Sbjct 7472 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACTATAACTCTCGAAGTTGAGAGTTCA 7531 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || ||| ||||| |||||||||||| |||| || | Sbjct 7532 GACACGATCGACAAT--GTTAAATCGAAAATCCAGGACAAAGAAGGTATTCCACCAGATC 7589 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||||| || || ||||| ||||||||| | || || | ||| | |||| | |||||| Sbjct 7590 AACAACGTTTGATCTTTGCAGGAAAACAACTCGAGGATGGACGGACTCTTG-CGGATTAC 7648 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| ||| | || | ||| | ||| | ||||| || Sbjct 7649 AACATTCAAAAGGAGTCAACTCTCCACCTTGTTCTTCGTCTACGTGGTGG 7698 >seq179153 Length=7583 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || || || |||||| | || || || ||| | Sbjct 4755 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCG 4696 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || | | ||||||||| | ||||| ||||| |||| || | Sbjct 4695 GACACCATTGATAAATGTTAAAACAAAAATTCAA-GACAAGGAAGGAATTCCTCCAGATC 4637 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||| ||||||||||||| ||||||||| | || || | || | |||| | |||||| Sbjct 4636 AACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTG-CTGATTAC 4578 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || || |||| | ||| | || |||||| | || || || Sbjct 4577 AATATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4528 >seq242921 Length=127737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||| | |||||||| || || |||| || || ||| || Sbjct 49335 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 49394 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| ||| || ||||| ||||| | || || | Sbjct 49395 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCAGATC 49452 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| |||||||| || || || | || || | ||| | |||| | || ||| Sbjct 49453 AGCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGACGAACTCTTG-CTGACTAC 49511 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| ||| | || | || | ||| ||||||| ||| Sbjct 49512 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGC 49562 >seq140002 Length=100703 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||| | || ||||| ||| || | || || || ||| | Sbjct 55333 ATGCAGATCTTTGTAAAAACTTTAACAGGGAAGACTATCACTCTCGAGGTTGAGAGCTCA 55392 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || ||||| ||||| |||| ||| | Sbjct 55393 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 55450 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| ||||| ||| | || || | || | | | | || |||| Sbjct 55451 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 55510 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || | ||| | ||||||||||| || Sbjct 55511 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTGCGTGGTGG 55559 >seq224189 Length=50442 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/235 (68%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || || || |||| |||||| | Sbjct 16630 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAATCC 16571 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| || || ||| || ||||| ||||| | || Sbjct 16570 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCAC 16516 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| ||||| ||| | ||||| ||||||||||| | || || | || | | | | Sbjct 16515 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTCGAGGATGGTCGAACTCTAGCTG 16456 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || ||| |||| | |||||||| | ||| | ||||| || Sbjct 16455 ATTACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 16401 >seq146937 Length=209544 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || || |||||| || || |||| ||||||||| || Sbjct 83168 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83227 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | |||| || | | | || | | || ||||| || || | || || Sbjct 83228 GACACTATCGACAA-CGTTAAGGCTAAGATTCAG--GACAAGGAGGGAATCCCACCAGAC 83284 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| ||||| |||||||| ||| | || |||| | | | | | |||||| Sbjct 83285 CAGCAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCTAGCTGATTAC 83344 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || | || ||||| | ||| | ||||| || Sbjct 83345 AACATCCAGAAGGAATCGACCCTTCACTTGGTCCTTCGTCTTCGTGGTGG 83394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354761139097986