Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq196472 96.9 2e-15
seq179153 86.0 4e-12
seq242921 84.2 2e-11
seq140002 84.2 2e-11
seq224189 82.4 5e-11
seq146937 82.4 5e-11
>seq196472
Length=12654
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || ||||||||||| || ||| || | || || || || |
Sbjct 7472 ATGCAGATCTTTGTAAAGACTCTTACTGGCAAGACTATAACTCTCGAAGTTGAGAGTTCA 7531
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| ||||| || ||| ||||| |||||||||||| |||| || |
Sbjct 7532 GACACGATCGACAAT--GTTAAATCGAAAATCCAGGACAAAGAAGGTATTCCACCAGATC 7589
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
| ||||| || || ||||| ||||||||| | || || | ||| | |||| | ||||||
Sbjct 7590 AACAACGTTTGATCTTTGCAGGAAAACAACTCGAGGATGGACGGACTCTTG-CGGATTAC 7648
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| ||||| ||| ||| | || | ||| | ||| | ||||| ||
Sbjct 7649 AACATTCAAAAGGAGTCAACTCTCCACCTTGTTCTTCGTCTACGTGGTGG 7698
>seq179153
Length=7583
Score = 86.0 bits (94), Expect = 4e-12
Identities = 160/230 (70%), Gaps = 5/230 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || || || || || || |||||| | || || || ||| |
Sbjct 4755 ATGCAAATCTTTGTTAAGACACTCACAGGAAAGACCATTACACTCGAGGTTGAGAGCTCG 4696
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | || | | ||||||||| | ||||| ||||| |||| || |
Sbjct 4695 GACACCATTGATAAATGTTAAAACAAAAATTCAA-GACAAGGAAGGAATTCCTCCAGATC 4637
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
| ||| ||||||||||||| ||||||||| | || || | || | |||| | ||||||
Sbjct 4636 AACAAAGGTTAATTTTTGCTGGAAAACAACTCGAGGATGGTCGAACACTTG-CTGATTAC 4578
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| ||||| || || |||| | ||| | || |||||| | || || ||
Sbjct 4577 AATATCCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4528
>seq242921
Length=127737
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||||||||||||| | |||||||| || || |||| || || ||| ||
Sbjct 49335 ATGCAGATTTTTGTGAAAACTTTGACTGGGAAGACCATCACCCTTGAGGTTGAGAGCTCC 49394
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| ||||| ||| || ||||| ||||| | || || |
Sbjct 49395 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCTCCAGATC 49452
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
|||| |||| |||||||| || || || | || || | ||| | |||| | || |||
Sbjct 49453 AGCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAGGATGGACGAACTCTTG-CTGACTAC 49511
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| || ||| ||| | || | || | ||| ||||||| |||
Sbjct 49512 AACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTCCGTCTGCGTGGTGGC 49562
>seq140002
Length=100703
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| |||||| | || ||||| ||| || | || || || ||| |
Sbjct 55333 ATGCAGATCTTTGTAAAAACTTTAACAGGGAAGACTATCACTCTCGAGGTTGAGAGCTCA 55392
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | ||| || || ||| || ||||| ||||| |||| ||| |
Sbjct 55393 GACACAATTGATAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 55450
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| |||| || ||||| ||||| ||| | || || | || | | | | || ||||
Sbjct 55451 AGCAAAGGTTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACCCTTGCTGACTACA 55510
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| ||| ||| | || | ||| | ||||||||||| ||
Sbjct 55511 ACATCCAAAAGGAGTCCACCCTCCACCTTGTTCTCCGTTTGCGTGGTGG 55559
>seq224189
Length=50442
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/235 (68%), Gaps = 10/235 (4%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || || |||||||| || || || || || || |||| |||||| |
Sbjct 16630 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAATCC 16571
Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901
||||| ||||||| || || ||| || ||||| ||||| | ||
Sbjct 16570 TCCGAC-----ACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCAC 16516
Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961
||| ||||| ||| | ||||| ||||||||||| | || || | || | | | |
Sbjct 16515 CGGACCAGCAGCGGCTCATTTTCGCCGGAAAACAGCTCGAGGATGGTCGAACTCTAGCTG 16456
Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||||| || ||| |||| | |||||||| | ||| | ||||| ||
Sbjct 16455 ATTACAACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTCTCCGTGGTGG 16401
>seq146937
Length=209544
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| ||||| || || |||||| || || |||| ||||||||| ||
Sbjct 83168 ATGCAAATCTTTGTTAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 83227
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| | | |||| || | | | || | | || ||||| || || | || ||
Sbjct 83228 GACACTATCGACAA-CGTTAAGGCTAAGATTCAG--GACAAGGAGGGAATCCCACCAGAC 83284
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||| |||| ||||| |||||||| ||| | || |||| | | | | | ||||||
Sbjct 83285 CAGCAAAGGTTGATTTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCTAGCTGATTAC 83344
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || || | || ||||| | ||| | ||||| ||
Sbjct 83345 AACATCCAGAAGGAATCGACCCTTCACTTGGTCCTTCGTCTTCGTGGTGG 83394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354761139097986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |