Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq224189 98.7 9e-16
seq188529 89.7 4e-13
seq24881 87.8 2e-12
seq192764 82.4 7e-11
seq182198 82.4 7e-11
>seq224189
Length=50442
Score = 98.7 bits (108), Expect = 9e-16
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || || || || ||||| || || ||||| | || ||
Sbjct 16418 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 16477
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193
|||||||| || || || || || |||||||||| ||||||| | || || ||||||
Sbjct 16478 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCT 16536
Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
||| || || | ||| | | | || ||| || || || || | ||||| |
Sbjct 16537 GGATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 16595
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| |||||||| ||||| || ||||| ||||||||
Sbjct 16596 TTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 16630
>seq188529
Length=122975
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| || || || ||||||| ||| || || ||| || ||||| |||||||| |||
Sbjct 109254 CCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCA 109195
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
||||| | | | || ||||| || || || |||||||| | ||||||||||| | |||
Sbjct 109194 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCAGGGGG 109136
>seq24881
Length=242481
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || | || || ||||| || || ||||| | || ||
Sbjct 141193 CACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 141134
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||| || || || || || ||||||||||| | || | || || ||||||
Sbjct 141133 AAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTTGTCCTG 141074
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || || | | | | || ||| || || || || | || || | ||
Sbjct 141073 GATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTT 141014
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|||||||| ||||| || ||||| ||||||||
Sbjct 141013 ACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 140981
>seq192764
Length=177479
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||| | ||| || || ||| || || || || |||||||| || ||||| |||| ||
Sbjct 143327 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 143386
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||| || || || || || ||||||||||| || | ||| | | || || ||
Sbjct 143387 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 143446
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || ||| | | | | || ||| || || || || | ||||| ||||
Sbjct 143447 GATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 143506
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
||||| || ||||| || ||||| ||||||||
Sbjct 143507 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 143539
>seq182198
Length=117957
Score = 82.4 bits (90), Expect = 7e-11
Identities = 68/82 (83%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154
||||||| ||||||||||| ||||| || || | || |||||||| || || |||||||
Sbjct 116502 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 116561
Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175
| ||||| ||||||| ||||||
Sbjct 116562 TCAGACGTTGCTGGTCCGGTGG 116583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428216317179134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |