Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq224189 98.7 9e-16 seq188529 89.7 4e-13 seq24881 87.8 2e-12 seq192764 82.4 7e-11 seq182198 82.4 7e-11 >seq224189 Length=50442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || || || || ||||| || || ||||| | || || Sbjct 16418 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 16477 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 |||||||| || || || || || |||||||||| ||||||| | || || |||||| Sbjct 16478 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCT 16536 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || | ||| | | | || ||| || || || || | ||||| | Sbjct 16537 GGATCTT-TGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 16595 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||||||| ||||| || ||||| |||||||| Sbjct 16596 TTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 16630 >seq188529 Length=122975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || ||||||| ||| || || ||| || ||||| |||||||| ||| Sbjct 109254 CCTCCCCTCAAACGCAACACCAGATGAAGTGTCGACTCCTTCTGTATGTTATAATCAGCA 109195 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| | | | || ||||| || || || |||||||| | ||||||||||| | ||| Sbjct 109194 AGTGTCCTTCCATCTTCAAGTTGCTTCCCTGCAAATATCAATCGCTGCTGGTCAGGGGG 109136 >seq24881 Length=242481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| || | || || ||||| || || ||||| | || || Sbjct 141193 CACCAAATGGAGAGTGGACTCCTTCTAGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 141134 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||| || || || || || ||||||||||| | || | || || |||||| Sbjct 141133 AAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGATGGGATGCCTTCCTTGTCCTG 141074 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | | | | || ||| || || || || | || || | || Sbjct 141073 GATCTTTGCCTTCACGTTATCAATTGTGTCGGAGGATTCGACCTCAAGGGTAATGGTCTT 141014 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||||||| ||||| || ||||| |||||||| Sbjct 141013 ACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 140981 >seq192764 Length=177479 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || |||||||| || ||||| |||| || Sbjct 143327 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 143386 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || ||||||||||| || | ||| | | || || || Sbjct 143387 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 143446 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || ||| || || || || | ||||| |||| Sbjct 143447 GATCTTGGCTTTCACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTTTT 143506 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 143507 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 143539 >seq182198 Length=117957 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| ||||| || || | || |||||||| || || ||||||| Sbjct 116502 CTTTTTGGATATTATAATCTGCAAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 116561 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | ||||| ||||||| |||||| Sbjct 116562 TCAGACGTTGCTGGTCCGGTGG 116583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428216317179134