Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq118536 201 1e-46
>seq118536
Length=58152
Score = 201 bits (222), Expect = 1e-46
Identities = 558/850 (66%), Gaps = 7/850 (1%)
Strand=Plus/Minus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|||| ||| || ||||||||||| || |||| ||| ||| ||||| ||||||||
Sbjct 25711 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 25652
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
||||| || ||||| | || ||| | | ||| | | ||||| ||||| ||
Sbjct 25651 GGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACG 25592
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450
||||| || || | |||||| | || | || ||||| | | | |||| || |||||
Sbjct 25591 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 25533
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
| || |||||| |||||| || || |||| | || | || | | ||
Sbjct 25532 ATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 25473
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570
| || | || | ||| | | | | | ||||| || |||||||| ||||||||
Sbjct 25472 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCGAAATCACAGTGCAAACC 25413
Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630
|||||| || ||| | ||||| || || |||||||| |||||||| || | ||||||
Sbjct 25412 TTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTT 25353
Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690
| ||| |||||||| || ||||| || || || ||||| || ||||| ||
Sbjct 25352 TAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGCAAAGGC 25293
Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750
|| || || | | || | || || ||||| || ||||| || ||
Sbjct 25292 AACCAAACGCTCCGCAAATGTTTCGGAACCATCG---ATCCAACGTAGGGCCCACTTCGC 25236
Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810
|| |||| ||| || || || || | | ||| |||||| | |||||||| |
Sbjct 25235 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 25176
Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870
||| | || || | |||| || || || ||||| || || || || ||||| || ||
Sbjct 25175 GTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGC 25116
Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929
|| || || ||||| |||||| | || || | ||||| ||||| || || |||
Sbjct 25115 GATTTGGAAGCCGTAGAAAGCA-CGCGCCTCGGCAACTTGGACTTCTTTCATGAACCTTC 25057
Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989
| ||| |||||| || || ||||| ||| || ||||| || | || |||| |
Sbjct 25056 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGA 24997
Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049
| || | | ||| | || | || ||| |||||| | ||| || |||||| |
Sbjct 24996 TGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATCGGAAGATAAATCGA 24937
Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109
|||||||| ||||||| || || ||| |||||||||||||| |||||| | || |
Sbjct 24936 CTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 24877
Query 5110 ACTGAATCGG 5119
| ||||| ||
Sbjct 24876 ATTGAATTGG 24867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425728041364694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |