Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq118536 201 1e-46 >seq118536 Length=58152 Score = 201 bits (222), Expect = 1e-46 Identities = 558/850 (66%), Gaps = 7/850 (1%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| ||| ||| ||||| |||||||| Sbjct 25711 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGCTCCATCCAATCAAAC 25652 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| || ||||| | || ||| | | ||| | | ||||| ||||| || Sbjct 25651 GGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAACAATCTATCAGCCACG 25592 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 ||||| || || | |||||| | || | || ||||| | | | |||| || ||||| Sbjct 25591 AATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG-CGCACAAGGCAGCGC 25533 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || |||||| |||||| || || |||| | || | || | | || Sbjct 25532 ATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATTCCCTTAACTCGTTC 25473 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 | || | || | ||| | | | | | ||||| || |||||||| |||||||| Sbjct 25472 CTCAGTAAGCTTCGTCCTTAACAAACTATAAAGCAAACAAGCGAAATCACAGTGCAAACC 25413 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||| || ||| | ||||| || || |||||||| |||||||| || | |||||| Sbjct 25412 TTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTT 25353 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 | ||| |||||||| || ||||| || || || ||||| || ||||| || Sbjct 25352 TAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCTTCCACACAAGCAAAGGC 25293 Query 4691 TACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || || || | | || | || || ||||| || ||||| || || Sbjct 25292 AACCAAACGCTCCGCAAATGTTTCGGAACCATCG---ATCCAACGTAGGGCCCACTTCGC 25236 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGG 4810 || |||| ||| || || || || | | ||| |||||| | |||||||| | Sbjct 25235 CTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGA 25176 Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | || || | |||| || || || ||||| || || || || ||||| || || Sbjct 25175 GTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGAGTGGATGTTTTCAATCGC 25116 Query 4871 AATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 || || || ||||| |||||| | || || | ||||| ||||| || || ||| Sbjct 25115 GATTTGGAAGCCGTAGAAAGCA-CGCGCCTCGGCAACTTGGACTTCTTTCATGAACCTTC 25057 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | ||| |||||| || || ||||| ||| || ||||| || | || |||| | Sbjct 25056 CGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGA 24997 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAA 5049 | || | | ||| | || | || ||| |||||| | ||| || |||||| | Sbjct 24996 TGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGTATCGGAAGATAAATCGA 24937 Query 5050 CTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGAT 5109 |||||||| ||||||| || || ||| |||||||||||||| |||||| | || | Sbjct 24936 CTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGT 24877 Query 5110 ACTGAATCGG 5119 | ||||| || Sbjct 24876 ATTGAATTGG 24867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425728041364694