Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq44392 100 4e-16 seq175890 95.1 2e-14 seq178632 91.5 2e-13 >seq44392 Length=18013 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 || |||| || || ||||| || || | ||| || || || || | ||| | ||||| Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| | || || || | ||| || | || | Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| ||||||||||| | || ||| ||||| || || || || Sbjct 9484 AGGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGTCATATATGAT 9532 >seq175890 Length=85540 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 77881 TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940 ||||||||| | | |||||||||||| | | ||| ||| ||||| || || |||| Sbjct 19597 TAGATTTGTTTTTAC-CTCTCTTTCATACTTTGAATACAGCTTCTCAAAATCTTCACCCC 19655 Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000 || ||| |||||||||| ||| |||| || | || ||||| | || | | | | Sbjct 19656 AACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCGT-TGCTT 19714 Query 78001 T-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTA 78059 | |||| || |||||| |||||||| | ||| |||||| || |||||||||| | | Sbjct 19715 TGGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGA 19774 Query 78060 TGTTCTTC 78067 |||||||| Sbjct 19775 TGTTCTTC 19782 >seq178632 Length=191222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||||||||| ||||||||||| || |||||| || ||| | | || Sbjct 179094 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 179035 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||||||| || || ||||| || || | ||| || || || || | ||| | ||||| Sbjct 179034 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 178976 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || || || ||||| || ||| || || || | ||| || | || | Sbjct 178975 GCATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAA 178916 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||| ||||| || || || || Sbjct 178915 GGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCTGTCATATATGAT 178867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692463938595520