Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq44392 100 4e-16
seq175890 95.1 2e-14
seq178632 91.5 2e-13
>seq44392
Length=18013
Score = 100 bits (110), Expect = 4e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
|||||| |||||||||||||| ||||||||||| || |||||| || ||| | | ||
Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364
Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516
|| |||| || || ||||| || || | ||| || || || || | ||| | |||||
Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || || || ||||| || ||| | || || || | ||| || | || |
Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483
Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
| ||||| ||||||||||| | || ||| ||||| || || || ||
Sbjct 9484 AGGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGTCATATATGAT 9532
>seq175890
Length=85540
Score = 95.1 bits (104), Expect = 2e-14
Identities = 136/188 (72%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 77881 TAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCC 77940
||||||||| | | |||||||||||| | | ||| ||| ||||| || || ||||
Sbjct 19597 TAGATTTGTTTTTAC-CTCTCTTTCATACTTTGAATACAGCTTCTCAAAATCTTCACCCC 19655
Query 77941 AAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCT 78000
|| ||| |||||||||| ||| |||| || | || ||||| | || | | | |
Sbjct 19656 AACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCGT-TGCTT 19714
Query 78001 T-AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTA 78059
| |||| || |||||| |||||||| | ||| |||||| || |||||||||| | |
Sbjct 19715 TGGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCCGA 19774
Query 78060 TGTTCTTC 78067
||||||||
Sbjct 19775 TGTTCTTC 19782
>seq178632
Length=191222
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
|||||| |||||||||||||| ||||||||||| || |||||| || ||| | | ||
Sbjct 179094 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 179035
Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516
||||||| || || ||||| || || | ||| || || || || | ||| | |||||
Sbjct 179034 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 178976
Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576
||| || || || ||||| || ||| || || || | ||| || | || |
Sbjct 178975 GCATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAA 178916
Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||||| |||||||| || | || ||| ||||| || || || ||
Sbjct 178915 GGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCTGTCATATATGAT 178867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692463938595520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |