Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16] 253,918 sequences; 2,221,987,173 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq118536 141 1e-28 seq178632 104 3e-17 seq44392 104 3e-17 seq175890 100 4e-16 >seq118536 Length=58152 Score = 141 bits (156), Expect = 1e-28 Identities = 560/875 (64%), Gaps = 16/875 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || | ||||| || |||||||| || |||| || || Sbjct 25726 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 25667 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| | |||| || | || | | | || || | | | Sbjct 25666 TCCATCCAATCAAACGGATTCTGAGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 25607 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | |||||| || |||||||| || || | |||||| || | ||||||||| | || Sbjct 25606 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 25547 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || | |||||| ||| || |||||||| | | || Sbjct 25546 GCACAAGGCAGCGCATCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 25487 Query 46579 GATGTTACTGTTTCCTCA-----CTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 | ||| ||||||| ||| || | | |||| | || || |||| | Sbjct 25486 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTT--AACAAACTATAAAGCA---AACAAG 25432 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 | |||||||| || | ||||| || || |||||| ||||| || || || | |||| Sbjct 25431 CGAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAG 25372 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||||| || |||||||| | ||| |||||||| ||| |||||| || || || | Sbjct 25371 GCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATAC 25312 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CATCATTATGAATCCA 46811 |||| ||| || || || || | | ||| || || || | | || ||||| Sbjct 25311 CTTCCACACAAGCAAAGGCAACCAAACGCTC--CGCAAATGTTTCGGAACCATCGATCCA 25254 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | | | ||||| | ||||| |||| ||||| || || || || | || || | Sbjct 25253 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 25194 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 | ||||||| ||| || || | || | |||| | ||||| ||||| || || Sbjct 25193 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 25134 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 || ||||||||||| || || || || ||||| ||| | || || | || || || Sbjct 25133 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGAC 25074 Query 46992 CTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 ||| | || | | ||| | | | || || || || || || || || |||| Sbjct 25073 TTCT-TTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAA 25015 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | || | || || | || |||| ||||| ||| || || | | ||||| | | Sbjct 25014 AGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGG 24955 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 |||| |||| ||| ||||||||||| |||||||| || || |||||||| |||| Sbjct 24954 TATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACA 24895 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATA 47205 | | ||| || | | ||||| || || || ||| Sbjct 24894 TTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 24860 >seq178632 Length=191222 Score = 104 bits (114), Expect = 3e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || |||| |||||| || || | |||||| ||||||| ||| | || | | Sbjct 179543 ACACCCTTTCTTTTACCACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACGCGC 179484 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| |||||||||||| |||| ||||| ||| ||| Sbjct 179483 AGCATAGGAACAATTCCATTTGATGTCCCATTTGTTCCACAAATGTAACTCCCAGTAGCA 179424 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || || | ||| | || ||||| || || ||| || | |||||| Sbjct 179423 CGTATGTTGTGCACAGAAACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACACTCC 179364 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || | || ||||| || ||||| ||||| || || ||||| | || || |||||| Sbjct 179363 TTAAGAGTATCATATATACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 179304 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| ||||| ||||||||||||||||||||| || ||| | | || Sbjct 179094 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 179035 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||||||| || | | ||| ||||| | ||| || || || |||| || | ||||| Sbjct 179034 ATATGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 178976 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| ||| || || || | ||| || | || | Sbjct 178975 GCATGTGTTGTGGCCTTTCTACAACTTTACCCCGAATCTTTAAGAGGTAAGACCTCTCAA 178916 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||| ||||| || || || || Sbjct 178915 GGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCTGTCATATATGAT 178867 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||||||| |||| ||||| |||||||| || | ||||||||||||| | Sbjct 181626 CAAAACTCTTCGACTGTAGATATTGGATGTATATGGCTCAAAGCATTCATTGTTTCCAAG 181567 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 |||||| ||||||||||| ||||| || ||||| | | |||||| | ||||| Sbjct 181566 AATTTGGCTGGTTGAAGCAGTAGGCATTGGAGCCACAAGAAGTGAATTTCTTACACCATT 181507 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904 || |||| | || ||| | ||||||||| |||||||||| Sbjct 181506 CTTTGTGATCATTTCACGAAGAGCTACCCAATCCCATTTATCTGATGGT 181458 >seq44392 Length=18013 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| ||||| ||||||||||||||||||||| || ||| | | || Sbjct 9305 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 9364 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || |||| || | | ||| ||||| | ||| || || || |||| || | ||||| Sbjct 9365 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 9423 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || || || | ||||||| ||| | || || || | ||| || | || | Sbjct 9424 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 9483 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | ||||| ||||||||||| | || ||| ||||| || || || || Sbjct 9484 AGGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGTCATATATGAT 9532 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || ||| |||||| || || | |||||| ||||||| ||| | || | | Sbjct 8863 ACACCCTTTCTTTTGCCACCTCCTTGGTCAACATATCTAGCAGTGTCATTGAATACACGC 8922 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| |||||||||||| ||| ||||| ||| ||| Sbjct 8923 AGCATAGGAACAATTCCATTCGATGTCCCATTTGTTCCATGAATGTAACTCCCAGTAGCA 8982 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 | || || | ||| | || ||||| || || ||| || | |||||| Sbjct 8983 CATATGTTGTGCACAGAAACTCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCC 9042 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || | || ||||| || ||||| ||||| || || ||||| | || || |||||| Sbjct 9043 TTAAGAGTATCATATATACCCTCAATACTGTCCTCTTTCATGCATATCAGGAAGCAGCTA 9102 >seq175890 Length=85540 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | || ||||| ||||||||||||||| ||| ||| | | || Sbjct 20438 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTTTGAGACATCAAATG 20497 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || || | || | | ||| ||||| | ||| || ||||| |||| || | ||||| Sbjct 20498 ATAAGTCTTGATGGCAGATTCAATATCATCCTTG-TGGATTCCAACAGAAACTCTCATCA 20556 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || || | ||||||| || ||| || || || | ||| || |||| Sbjct 20557 GCATATGTTGTGGCCTTTCTACAACATTTCCATTAATCTTTAAGAGGTAAGACCGCTCCA 20616 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||| |||||||| || | || |||||| || || || || || Sbjct 20617 GAGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 20665 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/190 (71%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 76476 TAGATTTGTATCGCTT--CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCC 76533 ||||||||| | || |||||||||||| | || ||| | | ||||| || || || Sbjct 19597 TAGATTTGTTT---TTACCTCTCTTTCATACTTTGAATACAGCTTCTCAAAATCTTCACC 19653 Query 76534 CCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTC 76593 |||| ||| |||| |||||| ||| | ||||| | || ||||| | || | | | Sbjct 19654 CCAACAATCTGCCAATCCAGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCGT-TGC 19712 Query 76594 CTT-AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 76652 || || | || |||||| |||||||| | ||| |||||| || |||||||||| | Sbjct 19713 TTTGGACTCTTTCCATAAAAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCGGGCCC 19772 Query 76653 TACGTTCTTC 76662 | ||||||| Sbjct 19773 GATGTTCTTC 19782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710671564037760