Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nicotiana_20sylvestris_20[refseq_20GCF_5F000393655.1_202013-05-16]
253,918 sequences; 2,221,987,173 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq196472 105 6e-18
seq28647 102 7e-17
seq179153 98.7 8e-16
seq72314 91.5 1e-13
seq188529 89.7 4e-13
seq242921 82.4 6e-11
seq198291 82.4 6e-11
>seq196472
Length=12654
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| || || ||||| || ||||| || || ||||| || ||
Sbjct 7699 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 7758
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| || ||| | || ||| |||||| || || ||||| |||| || ||
Sbjct 7759 GGACACTATTGATAACGTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 7818
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
||||||||| |||| ||| || || |||||||||||| ||| |||| ||||||||
Sbjct 7819 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 7878
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||| ||||| || || || || || |||| | || || || |||||
Sbjct 7879 TATTCAAAAGGAGTCAACGCTCCACCTAGTCCTTCGCCTTCGTGGTGG 7926
>seq28647
Length=54725
Score = 102 bits (112), Expect = 7e-17
Identities = 112/148 (76%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 111176 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111235
||||||||| | || ||||| ||||| |||| || ||||||||| | |||||||
Sbjct 9532 TAAAACAAAGA-TTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGGTTAATTTATG 9590
Query 111236 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111295
| || |||||| | |||||| | ||| | || |||||||| || || || ||||| |
Sbjct 9591 CTGGAAAACAACTCGAAGATGGTCGAACACTTGCTGATTATAACATTCAGAAGGAATCCA 9650
Query 111296 CACTACATTTAGTGTTGCGTCTGCGCGG 111323
|||| ||| | ||||||||||| |||||
Sbjct 9651 CACTCCATCTTGTGTTGCGTCTTCGCGG 9678
>seq179153
Length=7583
Score = 98.7 bits (108), Expect = 8e-16
Identities = 113/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 111176 TAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATG 111235
||||||||||| || ||||| ||||| |||| |||||||||||| | |||| ||
Sbjct 4677 TAAAACAAAAA-TTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTG 4619
Query 111236 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTA 111295
| || |||||| | || ||| | ||| | || ||||| ||||| || || ||||| |
Sbjct 4618 CTGGAAAACAACTCGAGGATGGTCGAACACTTGCTGATTACAATATCCAGAAGGAATCCA 4559
Query 111296 CACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
| || ||| | ||||||||||| ||||| ||
Sbjct 4558 CTCTCCATCTTGTGTTGCGTCTTCGCGGAGG 4528
>seq72314
Length=63918
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| || || || || || ||||| || || ||||| || |
Sbjct 55457 AATGCAAATCTTTGTTAAGACCTTAACTGGAAAAACAATCACGTTGGAAGTTGAGAGCTC 55516
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| | ||| | | || || |||||| || || |||||| |||| |||||
Sbjct 55517 GGACACGATTGACAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCACCGGATCA 55576
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| ||||| |||| ||| || ||||||||||||||| | ||| | || || |||||
Sbjct 55577 GCAGAGGCTGATTTTTGCAGGGAAACAATTGGAAGATGGGAGGACTCTTGCTGACTATAA 55636
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| || || ||||| || |||| | || || || |||||
Sbjct 55637 CATTCAAAAGGAGTCAACACTCCACCTAGTCCTTCGCCTTCGTGGTGG 55684
>seq188529
Length=122975
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||||||||| ||||| || || ||||| || ||||| ||| |
Sbjct 109256 ATGCAGATTTTTGTCAAAACTTTGACAGGAAAGACCATCACTTTGGAAGTGGAGAGCTCT 109315
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218
|| || ||| | | || || |||||| || |||||||| | |||| | |||||
Sbjct 109316 GACACTATTGACAACGTGAAGGCCAAAATTCAGGATAAAGAAGG-GATCCCACCAGATCA 109374
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| ||||| || | ||| || || || |||| ||| || | || ||||| ||
Sbjct 109375 GCAGAGGCTCATATTTGCTGGTAAGCAGCTGGAGGATGGGCGCACCCTTGCAGATTACAA 109434
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||| ||||| ||||| ||||| || | ||| | || || || |||||
Sbjct 109435 TATCCAAAAGGAATCCACACTCCACCTTGTGCTTCGCCTTCGTGGTGG 109482
>seq242921
Length=127737
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| ||||||||||| || | || || || ||||| || |||| ||| |
Sbjct 50019 ATGCAGATTTTTGTCAAGACTCTAACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCA 50078
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| ||| ||| ||||| || || |||| |||||
Sbjct 50079 GATACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAG 50138
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| ||||| |||| ||| || || || |||| ||| | || | || ||||||||
Sbjct 50139 CAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACCCTTGCAGATTATAAC 50198
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327
|| || |||||||| || || || | ||| | ||||| || ||||||
Sbjct 50199 ATCCAGAAAGAATCCACCCTTCACCTCGTGCTTCGTCTCCGTGGTGGC 50246
>seq198291
Length=74715
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252
||||||||||| | || ||||| || ||| | |||| ||| || ||||| ||||||
Sbjct 28545 GACAAAGAAGGGATACCTCCTGATCAGCAGAGGTTGATTTTTGCTGGAAAACAGTTGGAA 28604
Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111302
||| | |||| |||| ||||| ||||| || |||||||| ||||| ||
Sbjct 28605 GATGGTCGAACTCTGGCTGATTACAATATCCAGAAAGAATCAACACTTCA 28654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420505852251568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |