Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq119769 105 7e-18 >seq119769 Length=87979 Score = 105 bits (116), Expect = 7e-18 Identities = 481/750 (64%), Gaps = 11/750 (1%) Strand=Plus/Minus Query 16793 AATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGA 16852 |||||||| || || ||||| || |||| || ||| || || | |||||||| | || Sbjct 79047 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG- 78989 Query 16853 CGTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || || || || || || || ||| || | ||||| | || || || || || Sbjct 78988 CGCACAAGGCAGCGCGTCACACACAAACTCCCTT-TCTATCTCCACAGCATCTGCAACAA 78930 Query 16911 TACTAGCAACTCGTTCCTCGG-ACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 | | |||||||||||| | | | | | |||| | | || | || ||| || Sbjct 78929 TTCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAACTATAA-AGCAAACAAGCA 78871 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| || || || || ||||| || || | ||||| || || || || || ||| Sbjct 78870 AAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGGC 78811 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || || || || |||||||| ||||| || ||| ||||| || || ||||| Sbjct 78810 ATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAAAAAATACCT 78751 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || || | ||||| || | || || || || | || || || ||| |||| Sbjct 78750 TCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT--CGA-TCCAA 78694 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 | |||||| || || | || | || || || || | || |||||| Sbjct 78693 CGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAAT 78634 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | |||||| | ||| | || || | || | || || |||||||| ||||| Sbjct 78633 CTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGGAA 78574 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAAC 17328 || ||||| || || || || || || ||||| |||||| || || ||||| | ||| || Sbjct 78573 TGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CGCGCCTCCGCAACTTGGAC 78515 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| ||| | | | ||||| ||||| ||||||||||| ||||||||||| Sbjct 78514 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAA 78455 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAA 17448 || | | ||| | ||||||| ||||| | || || || ||||| Sbjct 78454 GGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGGT 78395 Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508 |||| |||| ||| ||||| || | ||||| ||| || | || ||||| ||||| Sbjct 78394 ATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 78335 Query 17509 ATTCCAAATATCATTGTATTGTATGGGGAA 17538 | |||||| | |||||| || ||||| Sbjct 78334 TTCCCAAATTTGTGGGTATTGAATTGGGAA 78305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516457156317960