Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq156841 167 3e-36 seq119769 163 3e-35 >seq156841 Length=49269 Score = 167 bits (184), Expect = 3e-36 Identities = 387/581 (67%), Gaps = 2/581 (0%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| || ||||| ||||| | ||| ||||| || |||||| ||||| || || || Sbjct 12900 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGT 12959 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||||| || |||||||| | ||| ||||| | | || | | | ||||| | Sbjct 12960 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 13018 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT 24309 | ||||| ||||| || |||||||||| | | || || | || ||| Sbjct 13019 AAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAACCAT 13078 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | | ||||| | |||||||| | ||||| || || ||||| | || Sbjct 13079 CGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGC 13138 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 || | | ||||||| | | || || | || | || | | ||||| |||| Sbjct 13139 GGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACA 13198 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || || || ||||||||||| || ||||| || ||||||||| | ||||||| || Sbjct 13199 TCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAA 13258 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 || |||||| | || | | | |||| ||||| || || ||||| ||| | Sbjct 13259 CTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGG 13318 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 | ||||| || | || || | || |||| |||| | || ||||| | | ||| | Sbjct 13319 CGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGT 13378 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 | | |||| ||||| ||| |||||||| | ||||| || || || || |||| Sbjct 13379 GACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTT 13438 Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | ||||| | ||| || | | ||||||||||| || ||| Sbjct 13439 TGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 13479 >seq119769 Length=87979 Score = 163 bits (180), Expect = 3e-35 Identities = 389/584 (67%), Gaps = 8/584 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| || ||||| ||||| | ||| ||||| || ||| || ||||| || || || Sbjct 78880 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGT 78821 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||||| || |||||||| | ||| ||||| | | || | | | ||||| | Sbjct 78820 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 78762 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 | ||||| ||||| || ||||| |||| | | || || | ||| | || Sbjct 78761 AAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGT 78702 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| | | ||||| | |||||||| | ||||| || || ||||| | | Sbjct 78701 CG---ATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTG 78645 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || | | ||||||| | | || || | || | || | | ||||| | Sbjct 78644 CGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGT 78585 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || ||||| ||||||||||| || ||||| || ||||||||| | ||||| | Sbjct 78584 ACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCG 78525 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || |||||| | || | | | |||| ||||| || || ||||| || Sbjct 78524 CAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGG 78465 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 | || ||||| || | ||||| | || |||| ||||| | || ||||| | | || Sbjct 78464 CGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCC 78405 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | ||||| ||||| ||| ||||| || | ||||| || || || || | Sbjct 78404 AGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTT 78345 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 |||| ||||| | ||| || | | ||||||||||| || ||| Sbjct 78344 TTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 78301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592472951524560