Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq80051 100 2e-16 seq162580 95.1 1e-14 seq142367 93.3 4e-14 seq129139 91.5 1e-13 seq86621 91.5 1e-13 seq23306 87.8 2e-12 seq99573 86.0 5e-12 seq118583 84.2 2e-11 seq58462 84.2 2e-11 seq66466 82.4 7e-11 >seq80051 Length=167733 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| | || || || |||||||| ||| || | | Sbjct 411 ATGCAAATCTTTGTTAAGACACTAACTGGAAAGACCATTACACTCGA---GGTTAACTCC 467 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || |||| ||||||| || || ||||| | || ||||||| Sbjct 468 GACACTATTGACAATGTTAAAACAAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 527 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||||| | || ||||| || |||||||| |||||| || || || | || ||||||| Sbjct 528 CAAAGGTTAATTTTTGCTGGAAAACAACTTGAAGATGGTCGAACAC--TTGCTGATTACA 585 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 |||||||||||||||| ||||| || | ||||| || | || ||||| || Sbjct 586 ATATTCAGAAGGAATCCACTCTCCATCTTGTGTTGCGTCTTCGCGGAGGTTA 637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | || ||||||||||||| | || ||||| || |||||||| || Sbjct 3170 GACAAGGAAGGAATTCCTCTAGATCAACAAAGGTTGATTTTTGCTGGAAAACAACTCGAG 3229 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || || || | || ||||| || |||||||||||||| || || || | |||| Sbjct 3230 GATGGTCGAACAC--TTGCTGATTATAACATTCAGAAGGAATCCACACTCCATCTTGTGT 3287 Query 29173 TACGATTACGAGGAGGGTA 29191 |||| | || ||||| || Sbjct 3288 TACGTCTTCGCGGAGGTTA 3306 >seq162580 Length=72030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| || || || ||||| || ||| ||| ||| | | Sbjct 31707 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 31648 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||||| ||||| || || | || ||| || Sbjct 31647 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 31588 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || ||| |||||||| | || | || ||||||||| Sbjct 31587 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 31528 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || ||||||||| ||||| Sbjct 31527 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 31498 >seq142367 Length=42869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 794 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 735 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 734 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 675 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || ||||||||||| || || || |||| ||| | || | || |||||||| Sbjct 674 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 615 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||| |||||||| || Sbjct 614 TATTCAGAAGGAGTCTACTCTCCA 591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || || || ||||||||||| ||| || | | Sbjct 1478 AATGCAAATCTTTGTTAAAACCTTAACTGGGAAAACCATTACATTGGAAGTTGAGAGCTC 1419 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || ||||| ||||| ||||| |||||| | || ||| || Sbjct 1418 AGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 1359 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || || || || || || ||| | |||||| | ||| |||| ||||| || Sbjct 1358 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAA 1299 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| |||||| | || | |||| |||| || Sbjct 1298 CATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 1251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| ||||| || || || || || ||| ||| | | Sbjct 1706 AATGCAAATTTTTGTTAAAACCTTGACTGGGAAGACAATCACATTGGAAGTCGAAAGCTC 1647 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || ||||| ||||| ||||| |||||| | || |||||| Sbjct 1646 GGACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATTCCACCAGATCA 1587 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || ||||| || || ||| ||| | || |||||||| Sbjct 1586 ACAATGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCGGATTACAA 1527 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||| ||||| || || || ||| Sbjct 1526 TATTCAAAAGGAGTCAACGCTCCAC 1502 >seq129139 Length=45594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || || || ||||||||||| ||| || | | Sbjct 31107 AATGCAAATCTTTGTTAAAACCTTAACAGGGAAAACCATTACATTGGAAGTTGAGAGCTC 31166 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||| ||||| |||||| | || ||| || Sbjct 31167 GGACACAATTGATAATGTTAAGACGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 31226 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || || ||||| || || ||| | |||||| | |||| |||| ||||| || Sbjct 31227 GCAGAGGCTGATTTTTGCTGGGAAGCAATTAGAAGATGGAAGAACTCTGGCTGATTATAA 31286 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||||| ||||||||| Sbjct 31287 CATCCAGAAGGAATCCACTCTTCAC 31311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| | | ||||| ||||| || ||||| || || ||| ||| | | Sbjct 30880 ATGCAAATTTCTGTTAAAACCTTGACTGGGAAAACAATCACATTGGAAGTCGAAAGCTCG 30939 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || ||||| ||||| ||||| |||||| | || ||||||| Sbjct 30940 GACACGATTGATAATGTTAAGGCCAAAATCCAAGATAAGGAAGGTATACCACCAGATCAA 30999 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || ||||| || || ||| ||| | || ||||||||| Sbjct 31000 CAACGTTTGATCTTTGCAGGAAAACAGCTCGAGGATGGACGGACTCTCGCGGATTACAAT 31059 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| || || || ||| Sbjct 31060 ATTCAGAAGGAGTCAACACTCCAC 31083 >seq86621 Length=111109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| || ||||| |||||||| || ||| || | | Sbjct 92276 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 92335 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 92336 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 92395 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || || || |||| ||| | || |||| |||||||| Sbjct 92396 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 92455 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| |||||||| ||||| || || | ||||| Sbjct 92456 TATCCAGAAGGAGTCTACACTCCATCTTGTGTT 92488 >seq23306 Length=7682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| || || ||||| | || |||||||||||| | || ||||| || || Sbjct 4641 AAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAA 4582 Query 29105 ACAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 29162 |||||| || ||| || || ||| || ||||||||||| ||||||||||| ||||| Sbjct 4581 ACAACTCGAGGATGGTCGAACACTT--GCTGATTACAATATCCAGAAGGAATCCACTCTC 4524 Query 29163 CACATGGTGTTACGATTACGAGGAGGGTA 29191 || | ||||| || | || ||||| || Sbjct 4523 CATCTTGTGTTGCGTCTTCGCGGAGGTTA 4495 >seq99573 Length=152460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| ||||| || ||||| || ||||| || || || Sbjct 108773 GACAAGGAAGGAATTCCCCCAGATCAGCAAAGGCTCATCTTCGCCGGCAAGCAGCTTGAG 108832 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | ||||||||||| || |||||||||||||| |||||| |||| | Sbjct 108833 GACGGCCGTACTCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCACTTGGTCCTC 108892 Query 29175 CGATTACGAGGAGGG 29189 || | ||||| ||| Sbjct 108893 CGTCTCCGAGGTGGG 108907 >seq118583 Length=73751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || ||||| || ||||| || ||| || | | Sbjct 38438 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 38379 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 38378 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCACCGGACCA 38319 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || ||||| |||| ||| | || |||| || ||||| Sbjct 38318 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 38259 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 ||| |||||||| |||||||| || Sbjct 38258 TATCCAGAAGGAGTCTACTCTCCA 38235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || ||| | || ||| || || ||||| || ||||| || |||||| ||||| Sbjct 39028 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 38969 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | ||| | || ||||| |||||||| ||||||||||| |||||| Sbjct 38968 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCTACCCTTCAC 38918 >seq58462 Length=37098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 13187 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 13246 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| || |||| ||||||||||||||||| ||||| ||||||||| | || || Sbjct 13247 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCTCGTTTT 13305 >seq66466 Length=51600 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| | || || ||||| || ||| ||| ||| | | Sbjct 28835 ATGCAGATCTTTGTCAAAACCCTAACCGGGAAAACAATCACCCTTGAAGTTGAAAGCTCT 28776 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || ||| || || ||||| | || |||||| Sbjct 28775 GACACTATCGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGAATCCCACCAGATCAG 28716 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || || || |||||||| | ||| | || |||||||| Sbjct 28715 CAGAGGTTGATATTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTAGCTGATTACAAC 28656 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||||||||| ||||||||| ||||| Sbjct 28655 ATCCAGAAGGAATCAACTCTTCACTTGGTG 28626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427457692614785