Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq142367 93.3 3e-14 seq118583 93.3 3e-14 seq162580 91.5 1e-13 seq86621 91.5 1e-13 seq129139 87.8 1e-12 seq80051 87.8 1e-12 seq58462 84.2 2e-11 >seq142367 Length=42869 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || ||||| |||||||| || ||| || | | Sbjct 794 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAAACCATCACATTAGAAGTTGAGAGCTC 735 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || ||| ||||| || ||| | || ||| || Sbjct 734 AGACACGATTGACAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCACCAGACCA 675 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || || || ||||| ||| | || | || |||||||| Sbjct 674 GCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAGGATGGTAGGACACTTGCAGATTACAA 615 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 |||||| ||||| |||||||| || Sbjct 614 TATTCAGAAGGAGTCTACTCTCCA 591 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 1156 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTAATTTTTGCAGGGAAACAATTGGAA 1097 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 1096 GATGAAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 1046 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 2068 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 2009 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 2008 GATGAAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 1958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || || || ||||||||||| ||| || | | Sbjct 1478 AATGCAAATCTTTGTTAAAACCTTAACTGGGAAAACCATTACATTGGAAGTTGAGAGCTC 1419 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| ||||| ||||| |||||| | || ||| || Sbjct 1418 AGACACAATTGATAATGTTAAGGCGAAAATCCAAGATAAGGAAGGTATCCCGCCAGACCA 1359 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || || || || || || ||||| |||||| | ||| |||| ||||| || Sbjct 1358 GCAGAGGCTGATTTTCGCTGGGAAGCAATTAGAAGATGGAAGAACGCTGGCTGATTATAA 1299 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||| |||||| | || | |||| |||| || Sbjct 1298 CATCCAGAAGGAATCTACCCTTCACCTTGTTCTCAGATTGAGAGGTGG 1251 >seq118583 Length=73751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 39028 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 38969 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| |||||||||||||||||||| |||||| Sbjct 38968 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCTACCCTTCAC 38918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || ||||| || ||||| || ||| || | | Sbjct 38438 AATGCAAATCTTTGTTAAAACCTTAACGGGAAAGACCATCACATTGGAAGTTGAGAGCTC 38379 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 38378 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATTCCACCGGACCA 38319 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| || ||||| ||||| ||| | || |||| || ||||| Sbjct 38318 GCAGAGGCTCATCTTTGCTGGAAAACAGTTGGAGGATGGTAGGACACTGGCGGACTACAA 38259 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||| || ||||| |||||||| || Sbjct 38258 TATCCAGAAGGAGTCTACTCTCCA 38235 >seq162580 Length=72030 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| ||||||| || || || ||||| || ||| ||| ||| | | Sbjct 31707 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 31648 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||||| ||||| || || | || ||| || Sbjct 31647 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 31588 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || || |||||||||||| | || | || ||||||||| Sbjct 31587 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 31528 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| || ||||||||| ||||| Sbjct 31527 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 31498 >seq86621 Length=111109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| || ||||| |||||||| || ||| || | | Sbjct 92276 AATGCAAATCTTCGTTAAAACCTTAACGGGAAAAACCATCACATTGGAAGTTGAGAGCTC 92335 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | || | ||| || || |||||||||||| | || || || Sbjct 92336 AGACACGATTGACAATGTGAAGGCGAAGATACAGGATAAAGAAGGTATACCACCGGACCA 92395 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| || || || ||||| ||| | || |||| |||||||| Sbjct 92396 GCAGAGGCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGGACCCTGGCTGATTACAA 92455 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| || ||||| ||||| || || | ||||| Sbjct 92456 TATCCAGAAGGAGTCTACACTCCATCTTGTGTT 92488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | || |||||||| || ||||| || || ||| || | | Sbjct 91592 AATGCAAATATTTGTTAAGACATTGACTGGAAAAACAATCACATTGGAAGTTGAGAGCAC 91651 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||| |||||| ||||| |||||| | || || || Sbjct 91652 GGACACTATTGATAACGTTAAGGCGAAAATTCAAGATAAGGAAGGTATTCCACCGGACCA 91711 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| || || ||||| || || |||||||||||| ||| |||| ||||| || Sbjct 91712 ACAAAGGCTGATTTTTGCTGGGAAGCAATTGGAAGATGGGCGCACTCTGGCAGATTATAA 91771 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| || || || ||| Sbjct 91772 TATTCAAAAGGAGTCAACGCTCCAC 91796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || |||||| |||||| | || ||||| || |||||||| ||| Sbjct 92142 GATAAGGAGGGTATCCCACCAGATCAGCAAAGATTGATTTTTGCAGGGAAACAATTAGAA 92201 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||| |||| ||||| || ||||||||||| || || || ||| Sbjct 92202 GATGGAAGAACTCTGGCTGATTATAACATTCAAAAGGAGTCGACACTCCAC 92252 >seq129139 Length=45594 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || || ||||| || ||||| || |||||||||||| Sbjct 31429 GATAAGGAGGGTATCCCACCAGACCAGCAGAGACTGATTTTTGCAGGGAAACAATTGGAA 31488 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || ||||| ||||||||||||||||| || |||||| Sbjct 31489 GATGGAAGGACTCTCGCAGATTATAATATTCAAAAGGAATCCACCCTTCAC 31539 >seq80051 Length=167733 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 25118 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 25177 ||||||| || || ||||| | || |||||||||||| | || ||||| || || Sbjct 491 AAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAAAGGTTAATTTTTGCTGGAAA 550 Query 25178 ACAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTT 25235 |||| | |||||| || || || | || |||||||||||||| |||||||| ||||| Sbjct 551 ACAACTTGAAGATGGTCGAACAC--TTGCTGATTACAATATTCAGAAGGAATCCACTCTC 608 Query 25236 CACATGGTGTTACGATTACGAGGAGGGTA 25264 || | ||||| || | || ||||| || Sbjct 609 CATCTTGTGTTGCGTCTTCGCGGAGGTTA 637 >seq58462 Length=37098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||||| || ||||| || ||||| || ||||| |||||| Sbjct 13187 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAGTTGGAA 13246 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| || |||| |||||||||||||| || ||||| ||||||||| | || || Sbjct 13247 GATGGTCGGACCCTGGCTGATTACAATATTCAGAAAGAATCAACTCTTCACCTCGTTTT 13305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409954456925258