Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq119769 170 2e-37 seq156841 156 4e-33 >seq119769 Length=87979 Score = 170 bits (188), Expect = 2e-37 Identities = 579/893 (65%), Gaps = 23/893 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 79182 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 79123 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCG 16045 | ||| ||| ||||| ||||||| ||||| | || || | |||| ||||| Sbjct 79122 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCT--GAGCATT-GTATAACTTATCA 79066 Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | ||| |||||||| ||||| ||||| || || | |||| ||||| Sbjct 79065 TAACCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCT 79006 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 | |||||||| | | | ||| | || || | ||| | ||||||| | Sbjct 79005 CCATTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCC 78946 Query 16166 ACCGCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG 16219 || || || || ||| || ||| | | || || | | | |||| || Sbjct 78945 ACAGCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAA 78889 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 | || || ||||||||||||||| ||||| ||||||||||| || |||||| Sbjct 78888 CTATAAAGCAA---ACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCG 78832 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || || || || | || ||||||| || || ||||| | ||| |||||||| || Sbjct 78831 TTCGAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAG 78772 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 ||||| || || |||||||| || |||||||||||||| ||||| | | ||| Sbjct 78771 CTTCCAGAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTT 78712 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 | || || ||||| | ||||| || || || | | ||||||| || Sbjct 78711 ---TCGGAACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATA 78655 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| | ||| ||||| ||||||| | || || |||| |||| Sbjct 78654 GTCTCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGA 78595 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCA 16578 || | ||| ||||| || ||||| || || || || || || || || || || |||||| Sbjct 78594 AGCAGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA 78535 Query 16579 TCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTAT 16638 | || || | | ||| ||||| |||||| | |||| |||||| ||| || Sbjct 78534 -CGCGCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGAT 78476 Query 16639 TCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA 16698 || || || || ||||| ||||| | || | || |||| ||||| | Sbjct 78475 GCCGTCTGAGGCGGCGAAAAAGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGT 78416 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 || || ||||| | |||| ||||||||||| || || ||||||| ||||| Sbjct 78415 TAGGGTTTCCCAGTGACGGGTATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGA 78356 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 78355 GGCTAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 78303 >seq156841 Length=49269 Score = 156 bits (172), Expect = 4e-33 Identities = 572/890 (64%), Gaps = 17/890 (2%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 12598 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 12657 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | ||| ||| ||||| ||||||| ||||| | | | || ||||| | Sbjct 12658 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGCGCATTGTACAGCTTATCATAA 12717 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | ||| |||||||| ||||| ||||| || || | |||| ||||| | Sbjct 12718 CCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCA 12777 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | | | ||| | || || | ||| | ||||||| | || Sbjct 12778 TTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACA 12837 Query 16169 GCTTC---AATGATTA---TATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGT 16222 || || || ||| || ||| | | || || | | | |||| || Sbjct 12838 GCATCTGCAACAATTCCCTTAACTCGTTCCTCAGTA---AGCTTCGTCCTTAACAAACTA 12894 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 | || || ||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct 12895 TAAAGCAA---ACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTC 12951 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || || || | || ||||||| || || ||||| | ||| |||||||| || Sbjct 12952 GAGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTT 13011 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 ||||| || || |||||||| || ||||| |||||||| ||||| | | ||| Sbjct 13012 CCAGAGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTT--- 13068 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | || || ||||| | ||||| || || || | | ||||||| || || Sbjct 13069 TCGGAACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 13128 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || | ||| ||||| ||||||| | || || || | |||| || Sbjct 13129 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGC 13188 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCT 16581 | ||| ||||| || || || || || || || || || || || || || |||||| | Sbjct 13189 AGACTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCA-CG 13247 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 || |||| | ||| ||||| |||||| | |||| |||||| ||| || || Sbjct 13248 CGCCTCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCC 13307 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 || || || ||||| ||||| | ||| | || |||| |||| | || Sbjct 13308 GTCTGAGGCGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAG 13367 Query 16702 TTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 || ||||| | ||| ||||||||||| ||||| ||||||| ||||| || Sbjct 13368 GGTTTCCCAGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGC 13427 Query 16762 AACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 | || ||||| ||||||| ||| || | | ||| ||| || |||| Sbjct 13428 TAAGGCTTTTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACA 13477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461539296794200