Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq129139 111 1e-19 seq86621 109 4e-19 seq142367 104 2e-17 seq118583 93.3 3e-14 seq60793 91.5 1e-13 seq58462 91.5 1e-13 seq156999 89.7 4e-13 seq7707 84.2 2e-11 seq162580 82.4 6e-11 seq99573 82.4 6e-11 >seq129139 Length=45594 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| |||||||| || ||||||||||| ||||| || Sbjct 31791 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 31732 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||||||||| || ||| | || || || || |||||| || Sbjct 31731 AAGAGTCCTCCCATCTTCCAATTGTTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGG 31672 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||||| ||| || | ||| ||||| | ||| Sbjct 31671 AATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTGTCAATCGTGTCCGAGCTCTCAAC 31612 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| |||| || || || || || ||||| ||||||||| Sbjct 31611 TTCCAACGTGATTGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 31563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| ||| ||||| || | |||||| || ||||| |||||||| || || || || Sbjct 31563 TCCACCCCTTAGCCTAAGAACAAGGTGAAGGGTGGATTCCTTTTGAATATTATAATCTGC 31504 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||||||||||||||| || ||| | || ||||| || || || || Sbjct 31503 GAGAGTCCTTCCATCTTCCAATTGTTTCCCTGCAAAAATCAGTCTCTGCTGGTCTGGTGG 31444 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 31443 GATACCCTCCTTATC 31429 >seq86621 Length=111109 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| || ||||| || |||||||| || || || || Sbjct 91820 TCCACCACGAAGGCGAAGGACTAGGTGGAGCGTTGACTCCTTTTGAATATTATAATCTGC 91761 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | |||||||||||| || || ||| | || || |||||||| ||| || Sbjct 91760 CAGAGTGCGCCCATCTTCCAATTGCTTCCCAGCAAAAATCAGCCTTTGTTGGTCCGGTGG 91701 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274 | ||||||||||| ||||| ||| || | ||| ||||| ||| |||| Sbjct 91700 AATACCTTCCTTATCTTGAATTTTCGCCTTAACGTTATCAATAGTGT--CCGTGCTCTCA 91643 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| || |||||||| || ||||| ||||||||| Sbjct 91642 ACTTCCAAT-GTGATTGTTTTTCCAGTCAATGTCTTAACAAATATTTGCATT 91592 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| ||||| || || ||||||||||| || || || Sbjct 92276 TCCACCACGAAGGCGAAGGACTAGGTGGAGTGTCGACTCCTTTTGAATGTTATAATCAGC 92217 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | | |||||| |||||||| || ||| | || | |||||| ||||| || Sbjct 92216 CAGAGTTCTTCCATCTTCTAATTGTTTCCCTGCAAAAATCAATCTTTGCTGATCTGGTGG 92157 Query 18218 CACGCCTTCCTTATC 18232 | || |||||||| Sbjct 92156 GATACCCTCCTTATC 92142 >seq142367 Length=42869 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| | |||||| || ||||||||||| ||||| || Sbjct 794 TCCACCACGAAGGCGAAGGACTAGGTGGACTGTTGACTCCTTTTGAATGTTATAGTCAGC 853 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||||||||| || || ||| | || || || || |||||| | Sbjct 854 AAGAGTCCTCCCATCTTCCAATTGCTTTCCTGCAAATATCAGCCTCTGCTGATCCGGTGA 913 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC--- 18274 | ||||||||| || ||||| | ||| || | ||| |||| ||| |||| Sbjct 914 GATGCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCAATCGTGT--CCGAGCTCTCA 971 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||| ||||| |||| ||||| || || || ||||| ||||||||| Sbjct 972 ACTTCCAAT-GTGATTGTTTTCCCGGTTAAGGTCTTAACAAAGATTTGCATT 1022 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| || | ||| || ||||| || |||||||| ||||| || || Sbjct 1478 TCCACCACGGAGACGAAGAACAAGGTGGAGCGTTGACTCCTTTTGAATATTGTAATCCGC 1537 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||| || | ||||| || ||| |||| | | ||||||||| || Sbjct 1538 GAGAGTCCGTCCATCCTCGAGCTGTTTTCCTGCAAAGATCAAACATTGTTGATCTGGTGG 1597 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCG 18275 | ||||||||||| |||| ||| || | ||| |||| ||| || ||| Sbjct 1598 AATACCTTCCTTATCTTGGATTTTGGCCTTAACATTATCAATCGTGT--CCGAGCTTTCG 1655 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| | || || ||||| ||||| ||||||||||||||| Sbjct 1656 ACTTCCAATGTGATTGTCTTCCCAGTCAAGGTTTTAACAAAAATTTGCATT 1706 >seq118583 Length=73751 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | ||| |||||||| || ||||||||||| ||||| || Sbjct 38438 TCCACCACGAAGGCGGAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 38497 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| ||| ||||| ||||| || ||| |||| || || || || ||| || Sbjct 38498 AAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGG 38557 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| || | ||| || | ||| ||||| | ||| Sbjct 38558 AATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAAC 38617 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || || || ||||| ||||| ||||||||| Sbjct 38618 TTCCAATGTGATGGTCTTTCCCGTTAAGGTTTTAACAAAGATTTGCATT 38666 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | ||| |||||||| || ||||||||||| ||||| || Sbjct 38666 TCCACCACGAAGGCGGAGGACTAGGTGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGC 38725 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| ||| ||| ||||| ||||| || ||| |||| || || || || ||| || Sbjct 38726 AAGTGTCCTACCATCCTCCAACTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGCGG 38785 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| || | ||| || | ||| ||||| | ||| Sbjct 38786 AATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAAC 38845 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || || || || ||||| ||||||||| Sbjct 38846 TTCCAATGTGATGGTTTTTCCAGTTAAGGTCTTAACAAAGATTTGCATT 38894 >seq60793 Length=88643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||||||||| || || Sbjct 4427 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 4368 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 4367 CAGGGTCCGCCCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 4308 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 4307 TATGCCTTCTTTATC 4293 >seq58462 Length=37098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | |||||| ||||||||||| ||||| ||||| || || Sbjct 13321 TCCTCCCCTGAGCCTCAAAACGAGGTGAAGAGTTGATTCTTTCTGAATATTGTAATCAGC 13262 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || || ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 13261 CAGGGTCCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 13202 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 13201 TATGCCTTCTTTATC 13187 >seq156999 Length=15918 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || || ||||||||||| || | ||| ||| |||| Sbjct 7917 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTACTATCT 7858 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||| ||||| ||| | || | ||||||||||| || | || |||||||| Sbjct 7857 TCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTATCC 7798 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | |||| |||| || || | Sbjct 7797 TGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCGACCTCAAGCGTAATAGTC 7738 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| ||||| ||||| |||||||| Sbjct 7737 TTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 7706 >seq7707 Length=91995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||||||||||||||| || || ||||| || || Sbjct 31097 TCCTCCCCTGAGCCTTAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGC 31038 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || ||| || ||||||||| ||||| || ||| | || | || || ||||| Sbjct 31037 CAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGCTGATC 30984 >seq162580 Length=72030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || || || || ||||| ||||| || || Sbjct 31480 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGC 31539 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | |||||||||||| || || ||| | || | ||||| || || || Sbjct 31540 TAAGGTCCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 31599 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| |||| ||| || | ||| |||||| | ||| Sbjct 31600 GATTCCCTCCTTATCCTGGATTTTAGCCTTAACATTGTCAATAGTGTCGGAGCTTTCGAC 31659 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| || || || ||||| || ||||| ||||| Sbjct 31660 TTCAAGGGTGATTGTTTTCCCAGTTAAGGTTTTGACGAAAATCTGCAT 31707 >seq99573 Length=152460 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || ||||||| ||| || || || || || |||||||||||||| || Sbjct 109591 TCCTCCCCTCAGCCTCAGTACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 109532 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||||||||| || || || ||| |||| || || || || || ||| Sbjct 109531 AAGGGTGCGACCATCTTCCAACTGCTTTCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 109472 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||||| | ||| ||||||| || Sbjct 109471 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAACTTTCAAC 109412 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | |||||||| | ||||| || || || ||||| Sbjct 109411 CTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTGACGAAGATCTGCAT 109364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378566151216015