Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq133954 89.7 4e-13 seq162580 86.0 5e-12 seq126260 82.4 6e-11 >seq133954 Length=6269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG- 24890 |||||||||||||| || || | || || ||||| || || |||| || || ||| Sbjct 5809 ATGCAGATATTTGTAAAGACACTCACTGGAAAAACCATTACTCTCGAGGTTGA---GAGT 5753 Query 24891 --CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | || |||| |||||| | || ||||| | || |||| Sbjct 5752 TCAGACACAATTGATAACGTGAAGGCCAAAATTCAAGACAAGGAAGGAATTCCCCCTGAC 5693 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||| || || |||| ||| || || ||||| |||||| | ||| | ||||| Sbjct 5692 CAGCAGCGATTGATATTTGCAGGGAAGCAACTTGAAGATGGAAGGACACTTGCTGATTAT 5633 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 | ||||||||| ||| | || |||||| | ||||| || ||| | |||||| Sbjct 5632 AACATACAGAAGGAGTCGACACTTCATCTGGTGTTGCGTTTGAGGGGAGGT 5582 >seq162580 Length=72030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || ||||||||||| || ||||| || ||| | || |||||| | Sbjct 31707 ATGCAGATTTTCGTCAAAACCTTAACTGGGAAAACAATCACCCTTGAAGTCGAAAGCTCC 31648 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | |||||||| ||||| | || || || | || |||||| Sbjct 31647 GACACTATTGACAATGTTAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 31588 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | || || | ||| || || ||| |||||||| | ||| | ||||||| Sbjct 31587 CAAAGGTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGGACCTTAGCTGATTACAAT 31528 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTG 25041 || ||||| ||| | || ||||| || ||| Sbjct 31527 ATTCAGAAGGAGTCGACTCTTCACTTGGTG 31498 >seq126260 Length=96127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||||||||| ||||| ||||| ||||| ||| | || || || ||| Sbjct 62172 CATGCAGATTTTTGTTAAAACTTTAACGGGCAAGACGATCACCCTTGAAGTTGA---GAG 62116 Query 24891 C---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTA--CCGGTT 24945 | || | | || | ||| |||| ||| | | | | | ||| ||| ||| || Sbjct 62115 CTCAGATACCATCGACAATGTAAAGGCAAAGA-TCCAGGACAAGGAGG-GTATTCCTCCA 62058 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 |||||||| | || |||| ||| || |||||||| || ||| | ||| | ||| Sbjct 62057 GACCAGCAGAGGTTGATATTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCAGAT 61998 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| || ||||| || | || |||||||| ||| | || || | ||||| Sbjct 61997 TACAATATTCAGAAGGAATCAACCCTTCATTTGGTGCTTCGTCTGAGGGGAGG 61945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417446263334240