Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq121296 120 3e-22 seq15852 116 3e-21 seq65957 114 1e-20 seq156841 98.7 9e-16 seq156824 98.7 9e-16 seq119769 98.7 9e-16 seq103224 98.7 9e-16 >seq121296 Length=44911 Score = 120 bits (132), Expect = 3e-22 Identities = 176/245 (72%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 38395 GACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||||| |||||| ||||||||| || ||||||||||| ||||||||||| |||||| Sbjct 5490 GACATACTTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACC 5431 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 || || |||| ||| ||| |||| || || || |||||| | ||| || | Sbjct 5430 ATCGTTGAGACATCAAATGATACGTTTTGATGGCAGATTCAATATCATCCTTGTGTATCC 5371 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA---TTATTCTGTT 38569 | | |||||| ||||| ||||| || ||||| ||||||| | |||| | | || || Sbjct 5370 CAACAGATACTCTCATCAGCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATC--TT 5313 Query 38570 TAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTAT 38629 |||| || || || | || || ||||| | ||||||||| ||| | ||||||| | Sbjct 5312 TAAG-AGGTAAGACCTCTCAAAGGTTTTGAAACCAAAATAATCATAGTCAAAATCTCTGT 5254 Query 38630 CGTAT 38634 | ||| Sbjct 5253 CATAT 5249 >seq15852 Length=16152 Score = 116 bits (128), Expect = 3e-21 Identities = 182/255 (71%), Gaps = 9/255 (4%) Strand=Plus/Minus Query 38385 AAAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCA 38442 |||| |||| ||| | |||||| ||||||||| || ||||||||||| ||||||||| Sbjct 4271 AAAAAAACT-GACGTACTTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCA 4213 Query 38443 TGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCG 38502 || |||||||| || |||| ||| |||||||| || || || |||||| | Sbjct 4212 TGAGTGAACCATCGTTGAGACATCAAATGATATGTTTTGATGGCAGATTCAATATCATCC 4153 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA--- 38559 ||| || || | |||||| ||||| ||||| |||||||| ||||||| | |||| Sbjct 4152 TTGTGTATCCCAACAGATACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCC 4093 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAA 38619 | || |||||| || || || | || | ||||| | ||||| ||| ||| | Sbjct 4092 CGAATC--TTTAAG-AGGTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCA 4036 Query 38620 TAATCTCTATCGTAT 38634 ||||||| || ||| Sbjct 4035 AAATCTCTGTCATAT 4021 >seq65957 Length=165596 Score = 114 bits (126), Expect = 1e-20 Identities = 170/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| ||||||||| || ||||||||||| ||||||||||| |||||||| || Sbjct 147940 TTGAGGTCTTGGAGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTG 147999 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || |||||| | ||| || || | ||| Sbjct 148000 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCATCCTTGTGGATCCCAACAGA 148059 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA---TTATTCTGTTTAAGTAG 38576 ||| ||||| ||||| |||||||| ||||||| | |||| | | || |||||| || Sbjct 148060 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAACTTTACCCTGAATC--TTTAAG-AG 148116 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || | || | ||||| | ||||| ||| ||| | | ||||| || ||| Sbjct 148117 GTAAGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAATCAAAGTCTCTGTCATAT 148174 >seq156841 Length=49269 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||||| || ||||||||||| || |||| || || || || ||| Sbjct 12901 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTT 12960 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || || ||||||| ||| ||||||||| || ||||| || Sbjct 12961 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 13020 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || || |||||| ||||| || || Sbjct 13021 AAAATACCTTCCACACAAGCAAAGGCAAC 13049 >seq156824 Length=33692 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38386 AAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||| | ||||| ||||||| ||||||||| || ||||| | || ||||| |||| Sbjct 24723 AATCAAATTGACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCAT 24664 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | |||||||| ||| |||| ||| ||| || | || || || |||||| | Sbjct 24663 GAGTGAACCATCTTTGAGACATCAAATGATAAGTCTTGATGGCAGATTCGATATCATCCT 24604 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || || | ||| || ||||| | |||||||||||||||||||| Sbjct 24603 TGTGGATTCCAACAGAAACTCTCATCAACATATGTTGTGGTCTTTCTA 24556 >seq119769 Length=87979 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||||| || ||||||||||| || || | || || || || ||| Sbjct 78879 AAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTT 78820 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| ||||| || || || ||||||| ||| ||||||||| || ||||| || Sbjct 78819 AATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCAGAGAAA 78760 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || || |||||| |||||||| || Sbjct 78759 AAAATACCTTCCACACAAGCAAATGCAAC 78731 >seq103224 Length=93449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38386 AAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||| | ||||| ||||||| ||||||||| || ||||| | || ||||| |||| Sbjct 76703 AATCAAATTGACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCAT 76644 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | |||||||| ||| |||| ||| ||| || | || || || |||||| | Sbjct 76643 GAGTGAACCATCTTTGAGACATCAAATGATAAGTCTTGATGGCAGATTCAATATCATCCT 76584 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || || | ||| || ||||| |||||||||||||| ||||||| Sbjct 76583 TGTGGATTCCAACAGAAACTCTCATCAGCATATGTTGTGGCCTTTCTA 76536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467539451349680