Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq119769 170 3e-37 seq156841 168 9e-37 >seq119769 Length=87979 Score = 170 bits (188), Expect = 3e-37 Identities = 567/875 (65%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || || || || | || || || |||||||| || |||| ||| || Sbjct 79168 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 79109 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| || ||||| | |||| || | || | | | ||||| || | Sbjct 79108 CTCCATCCAATCAAACGGATTCTGAGCATTGTATAACTTATCATAACCCAAAGCATCCAA 79049 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||||||||| || || ||||| || ||| | |||||| || | ||||||||| | || Sbjct 79048 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 78989 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 78988 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 78929 Query 36106 AGATATTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 36162 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 78928 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 78872 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 ||||| ||||| | ||| ||||| || ||| || ||||| || || || | ||| || Sbjct 78871 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 78812 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 36281 ||||| || |||||||| | ||| ||||| | | || | | | ||||| || ||||| | Sbjct 78811 CATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATAC 78753 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCC 36338 |||| || ||||| |||| | | ||| || | ||| || ||| |||| Sbjct 78752 CTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCC 78696 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | | | ||||| | |||||||| | ||||| || || ||||| | || || | Sbjct 78695 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 78636 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | ||||||| | | || || | || | || | | ||||| ||||| || | Sbjct 78635 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGG 78576 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 |||| ||||||||||| || ||||| || ||||||||| | ||||| | || || | Sbjct 78575 AATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGA 78516 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 ||||| | || | | | |||| ||||| || || ||||| ||| || |||| Sbjct 78515 CTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAA 78456 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || | ||||| | || |||| ||||| || ||||| | | ||| | | | Sbjct 78455 AGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGG 78396 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 ||||| ||||| ||| ||||| || | ||||| || || || || ||||| |||| Sbjct 78395 TATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACA 78336 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | | ||| || | | ||||||||||| || ||| Sbjct 78335 TTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 78301 >seq156841 Length=49269 Score = 168 bits (186), Expect = 9e-37 Identities = 390/584 (67%), Gaps = 8/584 (1%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 |||||| || ||||| ||||| | ||| ||||| || |||||| ||||| || || || Sbjct 12900 CAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGT 12959 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | ||| ||||||| || |||||||| | ||| ||||| | | || | | | ||||| | Sbjct 12960 TAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGA 13018 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 36329 | ||||| ||||| || |||||||||| | | ||| || | ||| || Sbjct 13019 AAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAAC--- 13075 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||| ||||| | | ||||| | |||||||| | ||||| || || ||||| | | Sbjct 13076 CATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTG 13135 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || | | ||||||| | | || || | || | || | | ||||| | Sbjct 13136 CGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGT 13195 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||| || || || ||||||||||| || ||||| || ||||||||| | ||||||| Sbjct 13196 ACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGG 13255 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 || || |||||| | || | | | |||| ||||| || || ||||| || Sbjct 13256 CAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGG 13315 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629 | || ||||| || | || || | || |||| |||| || ||||| | | || Sbjct 13316 CGGCGAAAAAGGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCC 13375 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | | | |||| ||||| ||| |||||||| | ||||| || || || || | Sbjct 13376 AGTGACGGGTATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTT 13435 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 |||| ||||| | ||| || | | ||||||||||| || ||| Sbjct 13436 TTTTGTACATTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 13479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656788605011480