Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq156841 84.2 2e-11 seq119769 84.2 2e-11 >seq156841 Length=49269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 13649 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13708 || ||| ||||| ||||||||||| || | || || || || ||| | ||||| | Sbjct 12893 TATAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCG 12952 Query 13709 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 13768 | || |||||||| ||||| || || || ||||||||||| ||||| ||| ||| || Sbjct 12953 AGAAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTC 13012 Query 13769 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | || || || || || || || |||||| || Sbjct 13013 CAGAGAAAAAAATACCTTCCACACAAGCAAAGGC 13046 >seq119769 Length=87979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 13649 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13708 || ||| ||||| ||||||||||| || | || || || || ||| | ||||| | Sbjct 78887 TATAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCG 78828 Query 13709 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 13768 | || |||||||| ||||| || || || ||||||||||| ||||| ||| ||| || Sbjct 78827 AGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTC 78768 Query 13769 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | || || || || || || || |||||| || Sbjct 78767 CAGAGAAAAAAATACCTTCCACACAAGCAAATGC 78734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477582285877080