Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq99787 91.5 1e-13 seq156999 89.7 4e-13 seq27789 89.7 4e-13 seq130076 84.2 2e-11 >seq99787 Length=38434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 || || || | ||| ||||| ||||||||||| | |||||||| | || | ||||||| Sbjct 19590 TCATCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCTTCT 19531 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| | ||||| || ||| ||||| |||||| | | ||| Sbjct 19530 TTATCCTGGATCTTTACCTTGACATTGTCAATGGTGTCTGAGTTCTCGACCTTAAGCGTA 19471 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| |||||||| |||||||| ||||| |||||||| Sbjct 19470 ATAGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 19433 >seq156999 Length=15918 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | ||| ||||| ||||||||||| | |||||||| | || | ||| || || Sbjct 7860 TCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGAATACCCTCCTTA 7801 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTAT 43073 || |||| | ||||| || ||| ||||| ||| |||||| || | ||| || Sbjct 7800 TCCTGGATCTTTGCCTTGACATTGTCAATGGTGTC-TGAGCTCTCGACCTCAAGCGTAAT 7742 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| |||||||| |||||||| ||||| |||||||| Sbjct 7741 AGTCTTTCCGGTCAGAGTTTTAACAAAGATTTGCAT 7706 >seq27789 Length=27798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || | ||||| ||| |||||| || | |||||||| | Sbjct 5277 CCGCCACGAAGGCGAAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 5336 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | ||| ||||| ||||||||||| | |||||||| | || Sbjct 5337 AGAGTTCTACCATCTTCAAGTTGCTTGCCAGCAAAAATCAACCTTTGTTGATCAGGAGGA 5396 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | ||||| || ||| ||||| ||| |||||| Sbjct 5397 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTC-TGAGCTCTCGAC 5455 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| ||||| ||||| || || ||||| ||||| |||||||| Sbjct 5456 CTCAAGCGTAATAGTCTTTCCAGTCAGGGTTTTGACAAAGATTTGCAT 5503 >seq130076 Length=26012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| |||| ||||| || | |||||||| | Sbjct 4157 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCT 4098 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||| ||||| ||||| | ||||| || || | || Sbjct 4097 AGGGTTCGGCCATCCTCCAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGA 4038 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||||||| | ||||| Sbjct 4037 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTGTCGGAGGATTCGACC 3978 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || | || || || || || ||||| |||||||| || || ||||| ||| Sbjct 3977 TCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTC 3927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380587597702326