Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq119769 185 1e-41 seq156841 178 2e-39 seq121296 86.0 8e-12 seq103224 86.0 8e-12 >seq119769 Length=87979 Score = 185 bits (204), Expect = 1e-41 Identities = 570/875 (65%), Gaps = 14/875 (2%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || || || || | || || || ||||||||||| |||| || || Sbjct 79168 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAG 79109 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||||||||| | |||| || | || | | | ||||| || | Sbjct 79108 CTCCATCCAATCAAACGGATTCTGAGCATTGTATAACTTATCATAACCCAAAGCATCCAA 79049 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||||||||| || | |||||| || ||| | |||||| || | ||||||||| | || Sbjct 79048 CAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAG 78989 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 78988 CGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAAT 78929 Query 42013 AGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 42069 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 78928 TCCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGC 78872 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| ||||||| ||| || || || ||| || ||||| || || || | ||| || Sbjct 78871 AAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTCGAGAAGGTTAATCCAGG 78812 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTC 42188 ||||| || |||||||| | ||| ||||||| | || | | | ||||| || || || | Sbjct 78811 CATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATAC 78753 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCC 42245 |||| || ||||| |||| | | ||| || | ||| || ||| |||| Sbjct 78752 CTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATGTTTCGGAACCGTCG---ATCC 78696 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 78695 AACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATA 78636 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | ||||||| | | || || | || | || | | ||||| ||||| || | Sbjct 78635 ATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGCAGACTGTACATCTCGG 78576 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||| ||||||||||| || || || || ||||||||| | ||||| | ||| || | Sbjct 78575 AATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCCGCAACTTGGA 78516 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 ||||| | || | | | |||| ||||| || || ||||| ||| || |||| Sbjct 78515 CTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAA 78456 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA 42545 | || | ||||| | || |||| ||||| | || |||| | | ||| | | | Sbjct 78455 AGGCAAGGACATGAGTGATGAAATGCCTTTCGCCGGGGGTTAGGGTTTCCCAGTGACGGG 78396 Query 42546 TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACA 42605 ||||| ||||| ||| ||||| || | ||||| || || ||| || ||||| |||| Sbjct 78395 TATCTGAAGATAAATCGACTTCCTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACA 78336 Query 42606 TATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | | ||| || | | |||||||||||||| ||| Sbjct 78335 TTTCCCAAATTTGTGGGTATTGAATTGGGAACATA 78301 >seq156841 Length=49269 Score = 178 bits (196), Expect = 2e-39 Identities = 568/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || | || || || ||||||||||| |||| || || Sbjct 12613 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAAACTAATCAGC 12672 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| |||| || | || | | | ||||| || | | Sbjct 12673 TCCATCCAATCAAACGGATTCTGCGCATTGTACAGCTTATCATAACCCAAAGCATCCAAC 12732 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||||||| || | |||||| || ||| | |||||| || | ||||||||| | || Sbjct 12733 AATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCATTCATTCCCACCAGC 12792 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | || || || || | ||| || ||| || || || |||| | ||| Sbjct 12793 GCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACAGCATCTGCAACAATT 12852 Query 42014 GATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGCG 42070 | ||| ||| ||| | | | | | || ||| || | | |||||| || Sbjct 12853 CCCTTAACTCGTTCCTCAGTAAGCTTCGTCCTTAACAAAC---TATAAAGCAAACAAGCA 12909 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| ||||||| ||| || || || |||||| ||||| || || || | ||| ||| Sbjct 12910 AAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAGAAAGTTAATCCAGGC 12969 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189 |||| || |||||||| | ||| ||||||| | || | | | ||||| || || || || Sbjct 12970 ATTAACCCCCGCTTTTTTAACCAGAATATAG-CACAGAAGCTTCCAGAGAAAAAAATACC 13028 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATCCA 42246 ||| || |||||||||| | | ||| || | ||| || ||| ||||| Sbjct 13029 TTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATGTTTCGGAAC---CATCGATCCA 13085 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 | | ||||| | |||||||| | ||||| || || || || | || || | Sbjct 13086 ACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCAACTGCGCGGAATAA 13145 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 | ||||||| | | || || | || | || | | ||||| ||||| || || Sbjct 13146 TCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGACTGTACATCTCGGA 13205 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 || ||||||||||| || || || || ||||||||| | ||||||| ||| || || Sbjct 13206 GTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCGGCAACTTGGAC 13265 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 |||| | || | | | |||| ||||| || || ||||| ||| || ||||| Sbjct 13266 TTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCTGAGGCGGCGAAAAA 13325 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 || | || || | || |||| |||| | || |||| | | ||| | | | | Sbjct 13326 GGCAAGGACGTGAGTGATGAAATGCCTTTCACCGGGGGTTAGGGTTTCCCAGTGACGGGT 13385 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||| ||||| ||| |||||||| | ||||| || || ||| || ||||| ||||| Sbjct 13386 ATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAGGCTAAGGCTTTTTTGTACAT 13445 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | ||| || | | |||||||||||||| ||| Sbjct 13446 TTCCCAAATTTGTGGGTATTGAATTGGGAACATA 13479 >seq121296 Length=44911 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| ||||||||||| || ||||| || || || |||||| || ||||| | || Sbjct 5471 AGTTCCAGCATTAAATAATGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATG 5412 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||||| | || || ||||| ||||| | ||| ||||| || || | || | ||| | Sbjct 5411 ATACGTTTTGATGGCAGATTCAATATCATCCTTG-TGTATCCCAACAGATACTCTCATCA 5353 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || || || ||||| || | || | || || || | ||| || | || | Sbjct 5352 GCATGTGGTGTGGCCTTTCTACAACTTTACCCTGAATCTTTAAGAGGTAAGACCTCTCAA 5293 Query 72596 AAGTTTTAAAACCAAAATA 72614 | ||||| ||||||||||| Sbjct 5292 AGGTTTTGAAACCAAAATA 5274 >seq103224 Length=93449 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | |||| ||| |||| |||| | || | | ||| |||| ||| ||| Sbjct 76992 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACGCGTAGCATCGGAACAATTCCA 76933 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || ||||| || ||| | ||||||||||| || ||| Sbjct 76932 TTTGATGTCCCATTAGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGAACAGAT 76873 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || || ||| || | || ||| || | || ||||| ||| Sbjct 76872 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACATTCCTTAAGAGTGTCATATATG 76813 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| |||||||| || ||||| | || || |||||| Sbjct 76812 CCCTCAATACTATCTTCTTTCATGCATACAAGGAAGCAGCTA 76771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669727735537720