Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq27789 107 2e-18 seq23306 95.1 1e-14 seq86621 93.3 4e-14 seq121930 91.5 1e-13 seq66466 91.5 1e-13 seq116815 89.7 5e-13 seq118583 87.8 2e-12 seq60793 87.8 2e-12 seq99787 86.0 6e-12 seq103224 84.2 2e-11 seq65957 84.2 2e-11 seq48865 84.2 2e-11 seq156999 82.4 8e-11 >seq27789 Length=27798 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | ||| | ||| | || || ||||| || ||||||||||| Sbjct 5048 GCCACCTCTAAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGC 5107 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| ||| ||| || ||||| || || ||| ||||||| | ||||| || ||||| Sbjct 5108 CAATGTCCTCCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGG 5167 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| ||| ||||| | || | || || | ||| || Sbjct 5168 AATACCTTCCTTGTCTTGAATCTTTGCTTTTACATTGTCGATAGTATCTGAACTTTCAAC 5227 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || | ||||||||||| | ||| || || || || |||||| Sbjct 5228 TTCAAGGGTGATGGTCTTGCCGGTAAGTGTCTTGACAAAGATCTGCATA 5276 >seq23306 Length=7682 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | ||| | || ||||| || || || |||||||| Sbjct 4498 CCTCCGCGAAGACGCAACACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGCA 4557 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | ||| |||| || ||||||||||| |||||| | || | | ||| ||||| |||| Sbjct 4558 AGTGT--TCGACCATCCTCGAGTTGTTTTCCAGCAAAAATTAACCTTTGTTGATCTGGAG 4615 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC--TGTTCCACCGTGTCCGTGGGTTC 143133 | || ||||| ||||| | | ||||||||||| | | || | ||||||| | || Sbjct 4616 GAATTCCTTCCTTGTC-TTGAATTTTTGTTTTAACATTTATCAATGGTGTCCGAGCTCTC 4674 Query 143134 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || | ||||| || || | ||| || || || |||||||| Sbjct 4675 AACCTCGAGTGTAATGGTCTTTCCTGTGAGTGTCTTAACAAAGATTTGCAT 4725 >seq86621 Length=111109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| | || | || || || ||||| ||||||||||| Sbjct 91591 CCACCACGTAGACGAAGAACAAGGTGGAGAGTTGACTCCTTTTGAATGTTGTAATCCGCA 91532 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || ||||||||||| || ||| |||||| |||||| ||||| || || Sbjct 91531 AGAGTCCGTCCA-TCCTCGAGTTGTTTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGG 91473 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||||| ||| | | || | |||||| | || || Sbjct 91472 AATACCTTCTTTGTCCTGGATTTTCGATTTAACATTGTCGATCGTGTCTGAACTCTCAAC 91413 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | |||||||| || | || ||||| || || ||||| Sbjct 91412 TTCGAGAGTTATAGTCTTGCCAGTAAGAGTCTTTACAAAGATCTGCAT 91365 >seq121930 Length=130577 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 143028 |||| || ||||| | || ||||| || || ||||||||||| ||| | ||| || Sbjct 39737 CGCAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCT-AGTGTCCTTCC 39795 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || |||||| | || || | ||||| || || || || ||||| || Sbjct 39796 ATCCTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTT 39855 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || ||||||| || | | || | ||||||| | || ||||||| ||| | Sbjct 39856 ATCTTGAATTTTTGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACTTCAAGAGTAAT 39915 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || |||||||| ||||| || || ||||||||| Sbjct 39916 AGTTTTCCCGGTCAAGGTTTTCACAAAGATTTGCATA 39952 >seq66466 Length=51600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | ||| | || || |||| || ||||| ||||| |||||||| ||| Sbjct 29064 GCCTCCTCTAAGACGGAGCACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGC 29123 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||||||| || || || || ||||||| | |||||| || || || Sbjct 29124 TAGGGTTCTGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCCGGTGG 29183 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| || || | | || | ||||| | | ||| || Sbjct 29184 GATTCCTTCTTTGTCCTGAATCTTAGCCTTAACGTTGTCAATAGTGTCGGAGCTTTCAAC 29243 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || | ||||| ||||| || ||||| Sbjct 29244 CTCAAGGGTTATGGTCTTTCCAGTTAGGGTTTTAACGAAGATCTGCAT 29291 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| ||||| || || || ||||||||||| Sbjct 28837 CCGCCGCGAAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 28896 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || || ||| ||||||| | |||||| ||||| || Sbjct 28897 AGGGTTCGGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCGGGTGGG 28956 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || ||||| || ||||| || | | || | ||||| | | ||| ||| Sbjct 28957 ATTCCCTCTTTATCCTGGATTTTCGCCTTAACGTTATCAATAGTGTCGGAGCTTTCAACT 29016 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 29017 TCAAGGGTGATTGTTTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 29063 >seq116815 Length=25284 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018 |||| || | |||||| || | ||| | ||| ||||| || || ||||| ||||| | Sbjct 19377 CTCCGCGAAGACGCAACACAAGATGGAGTGTGGATTCCTTCTGAATGTTATAATCAGCAA 19436 Query 143019 TTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 ||| |||| |||||||||||||| |||||||| || | | ||| || || ||||| Sbjct 19437 GTGT--TCGACCATCTTCGAGTTGTTTTCCAGCATAAATTAACCTTTGTTGGTCTGGAGG 19494 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTA 143135 || ||||| ||||| | | | ||||||||| | | || | ||||| | | || | Sbjct 19495 AATTCCTTCCTTGTC-TTGAATCTTTGTTTTAACATTGTCAATGGTGTCTGAGCTCTCAA 19553 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATT 143179 |||| | || | ||||| || || | || || ||||| ||| Sbjct 19554 CTTCGAGTGTTATGGTCTTTCCAGTAAGGGTCTTGACGAAGATT 19597 >seq118583 Length=73751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||| || || ||||| || |||||||| | || | | || ||||| ||| Sbjct 39582 TGAAGTGTCGACTCCTTTTGAATATTGTAATCTGCGAGAGTACGCCCATCCTCGAGCTGT 39641 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| |||||| |||||| ||||| || || || ||||||||||| ||||| Sbjct 39642 TTTCCTGCAAAGATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTGTCCTGGATTTTG 39701 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | |||||| | || ||||| | ||| | |||||||| ||| Sbjct 39702 GCTTTAACATTGTCGATCGTGTCTGAACTCTCAACTTCGAGAGTTATAGTCTTGCCAGTC 39761 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || || || || ||||| Sbjct 39762 AGGGTCTTCACAAAGATCTGCAT 39784 >seq60793 Length=88643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| | |||| || |||||||| || ||||||||||| || || | | || Sbjct 4412 CAAAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGCCCATC 4353 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||| |||||| | ||||| | |||||||| ||||||||||||||||| || Sbjct 4352 TTCCAACTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTATC 4293 Query 143092 --GGTAA 143096 ||||| Sbjct 4292 CTGGTAA 4286 >seq99787 Length=38434 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || ||||||||||| || ||| ||| ||| || ||||| || ||| Sbjct 19857 GTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGCTTCCCA 19798 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | | ||| || ||||| || ||||| ||||| || ||| ||| Sbjct 19797 GCAAAGATCAGTCTCTACTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTACTTTA 19738 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | ||| ||||||| || | ||||||||||| | || Sbjct 19737 ACATTGTCAATGGTATCTGAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 19678 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 19677 TTGACAAAGATCTGCAT 19661 >seq103224 Length=93449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| || || | ||| || | |||| || || || ||||| || | |||||| || Sbjct 78352 AATGTGTCTGCAAGACCCTGGACCCCAAGTCCAATAGGTCGATGTCGTAAATTAGACCTT 78293 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 ||||||||||||| ||||||| | ||| ||||||||||||||||| Sbjct 78292 TTTGCAGTTTCAACAGGGTAGTAGTTGACATCAATAATTTTATTCA 78247 >seq65957 Length=165596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| || || | ||| |||| ||||| || || || | ||| || | || ||| || Sbjct 146181 AATGTGTCTGCAAGACCCTGAACTCCAATTCCAATAGGCCTATGTCGTAAGTTGGATCTT 146240 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 ||||||||||||| ||||||| ||||| |||||||||||| |||| Sbjct 146241 TTTGCAGTTTCAACAGGGTAGTAATTGACATCAATAATTTTGTTCA 146286 >seq48865 Length=263615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| | |||| ||| |||||||| || || |||||||| | Sbjct 56273 CCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGCC 56332 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| | ||||| |||||| | ||||| | ||||| || |||| Sbjct 56333 AGAGT--TCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCAGGAG 56390 Query 143076 GTATGCCTTCTTTGTC--GGTAA 143096 |||| ||||||||||| ||||| Sbjct 56391 GTATCCCTTCTTTGTCCTGGTAA 56413 >seq156999 Length=15918 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || ||||||||||| ||| | | ||| ||| || ||||| || ||| Sbjct 8129 GTTGACTCTTTCTGAATGTTGTAATCTGTCAAT-TCCTCCCGTCCTCAAGTTGCTTCCCA 8071 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||| || ||||| || ||||| ||||| || ||| ||| Sbjct 8070 GCAAAGATCAGTCTCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTTGATTTA 8011 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || ||| ||||||| || | ||||||||||| | || Sbjct 8010 ACATTGTCGATGGTATCTTAACTTTCAACTTCAAGGGTGATTGTCTTGCCGGTAAGCGTC 7951 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 7950 TTGACAAAGATCTGCAT 7934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505948104353040