Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq162580 107 2e-18 seq133954 95.1 1e-14 seq126260 91.5 1e-13 seq27789 91.5 1e-13 seq66466 89.7 4e-13 seq78068 82.4 6e-11 >seq162580 Length=72030 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| || || || |||||||||| ||| | | || |||| ||| Sbjct 31048 GTGCAGAGTCGACTCCTTCTGGATGTTATAATCCGCCAGAGTTCTTCCATCTTCCAACTG 31107 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || |||||||||||| ||| | ||||| ||||| ||| || Sbjct 31108 CTTCCCAGCAAAAATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 31167 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | ||||||| | |||| || | || |||||||| ||||| Sbjct 31168 AGCCTTCACATTGTCAATAGTATCGGAACTCTCCACCTCCAAAGTGATGGTTTTCCCTGT 31227 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 31228 CAACGTCTTCACAAAAATCTGCAT 31251 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || |||||||| || || |||||||| || | ||| | | || || Sbjct 31270 CACAAGGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGGCCATCTTC 31329 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| ||||| ||| | || || || |||||||| || | ||||| || || Sbjct 31330 CAACTGCTTACCAGCAAAGATCAGCCTTTGCTGATCTGGTGGGATACCCTCCTTATCCTG 31389 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCT--CCGTTTCGACGGTAATGGT 19008 || ||| || || | | ||| ||| || || ||| || || | || ||||| Sbjct 31390 GATCTTCGCCTTAACGTTGTCGATAGTGTC---AGAGCTTTCCACCTCAAGAGTGATGGT 31446 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || || ||||| ||||||||||| |||||| Sbjct 31447 TTTCCCGGTCAAAGTCTTGACAAAAATCTGCATT 31480 >seq133954 Length=6269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| ||||||||||| || | || | ||||| Sbjct 5372 CACAAGGTGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTC 5431 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || ||||| || Sbjct 5432 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTG 5491 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 5492 AATTTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 5551 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||||||||||||||| ||||| Sbjct 5552 TCCTGTCAAAGTTTTGACAAAAATCTGCAT 5581 >seq126260 Length=96127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| ||||||||||| || | || | ||||| Sbjct 61506 CACAAGGTGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTC 61565 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | || || ||||||||||| || | || ||||| || Sbjct 61566 CAGCTGCTTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTG 61625 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | | | ||| || |||| ||| | || ||||| || Sbjct 61626 AATTTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACTTCCAAAGTGATGGTCTT 61685 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| |||||||||||||| || ||||| Sbjct 61686 TCCTGTCAAAGTTTTGACAAATATCTGCAT 61715 >seq27789 Length=27798 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || ||||| || ||||| |||||||| |||| ||| | ||||||| || || Sbjct 5073 TGCAGGGTTGACTCTTTCTGAATGTTGTAATCTGCCAATGTCCTCCCGTCCTCAAGTTGC 5132 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || ||||||||||| ||| || | || || ||||| ||| || Sbjct 5133 TTCCCGGCAAAGATCAGTCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCTTGAATCTTT 5192 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | ||| |||||| | || ||| | ||| ||||| || || || Sbjct 5193 GCTTTTACATTGTCGATAGTATCTGAACTTTCAACTTCAAGGGTGATGGTCTTGCCGGTA 5252 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | || |||||||| || ||||| Sbjct 5253 AGTGTCTTGACAAAGATCTGCAT 5275 >seq66466 Length=51600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| ||||| |||||||| || | ||| | || |||| || Sbjct 28177 GTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTG 28236 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || |||||| | || || |||||||||||| ||| | ||||| ||||| ||| || Sbjct 28237 CTTTCCCGCAAAGATCAGCCTCTGCTGATCC-GGGGGATACCCTCCTTGTCCTGAATCTT 28295 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | | |||||| | ||| || | || |||||||| || || Sbjct 28296 AGCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGT 28355 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || |||||||| ||||| Sbjct 28356 TAACGTCTTCACAAAAATCTGCAT 28379 >seq78068 Length=5642 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/199 (69%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||| |||||||||||||| | || | ||||||||||| ||||| Sbjct 3108 GTGGATTCCTTTTGGATATTGTAATCCGCAAGGGTACGCCCATCCTCCAGCTGCTTACCA 3049 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||| | || || | || |||||||| |||||||| || Sbjct 3048 GCAAACATGAGCCTCTGCGGGTCTGGTGGGATCCCTTCTTTGTCCTCAATTTTCGCCTTC 2989 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAA--G 19022 || | | | ||| ||| |||| ||| | || ||||| || ||||| ||| | Sbjct 2988 ACATTATCTATAGTGTCGGAGCTCTCCACTTCTAATGTTATGGTCTTCCCTGTCAAAGTG 2929 Query 19023 TTTTGACAAAAATTTGCAT 19041 | |||||||| || || || Sbjct 2928 TGTTGACAAATATCTGTAT 2910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413722714198318