Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq86621 98.7 6e-16 >seq86621 Length=111109 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || | || |||||| | ||| | ||| ||||| || || ||||||||||||| | Sbjct 92503 CCACCCCTCAGCCTCAACACAAGATGGAGTGTAGACTCCTTCTGGATATTGTAATCAGCC 92444 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || ||||| ||||||||| ||| || | | |||||||||| ||| Sbjct 92443 AGGGTCCTACCATCCTCCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGT 92384 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || |||||||| || ||| | || || | | ||||||||| | | ||| Sbjct 92383 ATACCTTCTTTATCCTGTATCTTCGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACT 92324 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || ||||||||||| | ||||| ||||| |||||||| Sbjct 92323 TCCAATGTGATGGTTTTTCCCGTTAAGGTTTTAACGAAGATTTGCAT 92277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318123943243806