Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq48865 102 7e-17 seq66466 96.9 3e-15 seq7707 93.3 4e-14 seq129139 84.2 2e-11 seq133954 82.4 6e-11 seq121930 82.4 6e-11 >seq48865 Length=263615 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||||| | |||||| |||| || ||||| |||||||| || || Sbjct 56261 TTAATCATAGTTCCTCCTCTGAGCCTCAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 56320 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| |||||||| Sbjct 56321 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGCCTCTGC 56380 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||||||||| Sbjct 56381 TGGTCAGGAGGTATCCCTTCTTTGTC 56406 >seq66466 Length=51600 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || || || ||||||||||| | | ||| |||||||||||| Sbjct 28178 TGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGGGTTCGTCCATCTTCCAATTGC 28237 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| | || |||||||| ||||| ||| | || || ||||| ||| || Sbjct 28238 TTTCCCGCAAAGATCAGCCTCTGCTGATC-CGGGGGATACCCTCCTTGTCCTGAATCTTA 28296 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | | ||| || ||| | |||| |||| || |||||||| ||||| Sbjct 28297 GCTTTCACATTGTCAATAGTATCAGAACTTTCCACCTCCAAAGTGATGGTTTTCCCGGTT 28356 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| ||||| Sbjct 28357 AACGTCTTCACAAAAATCTGCAT 28379 >seq7707 Length=91995 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | ||| || |||| || ||||| |||||||| || || Sbjct 31108 TTAATCATAGTTCCTCCCCTGAGCCTTAAAACCAGGTGAAGTGTTGATTCTTTCTGGATA 31049 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| ||| |||| | ||||||||| ||||| || ||| |||| | |||||| Sbjct 31048 TTGTAATCAGCCAGAGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAACCTCTGC 30989 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 30988 TGATCAGGAGGTATCCCTTCTTTGTC 30963 >seq129139 Length=45594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| || || ||||| ||||| || || | | ||| | ||||||||||||| Sbjct 31766 TGGAGTGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTCCTCCCATCTTCCAATTGT 31707 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| |||||||| ||||| || | |||||| || || |||||| Sbjct 31706 TTCCCAGCAAAAATCAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTATCTTGAATTTTG 31647 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 || || | | ||| | || | || | || ||||| || || ||||| || || Sbjct 31646 GCCTTAACATTGTCAATCGTGTC-CGAGCTCTCAACTTCCAACGTGATTGTTTTTCCAGT 31588 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| ||||||||| Sbjct 31587 TAAGGTCTTAACAAAGATTTGCATT 31563 >seq133954 Length=6269 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| ||||| || |||||||| | | || ||| |||| || Sbjct 5379 TGGAGTGTGGATTCCTTTTGGATATTGTAATCTGCAAGGGTGCGCCCATCCTCCAGCTGC 5438 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | || |||||||| ||||| || | |||||||| || |||||| Sbjct 5439 TTACCAGCAAATATGAGCCTCTGCTGATCTGGTGGGATCCCTTCTTTATCCTGAATTTTG 5498 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||||| | | ||| || || || | ||| ||||| || ||||| || || || Sbjct 5499 GCCTTCACGTTGTCAATAGTGTCAG-AGCTCTCCACTTCCAAAGTGATGGTCTTTCCTGT 5557 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||||||||| ||||| Sbjct 5558 CAAAGTTTTGACAAAAATCTGCAT 5581 >seq121930 Length=130577 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||||||| || || ||||| || || ||||||||||| | | || | ||| Sbjct 39739 CAGCACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAATCAGCTAGTGTCCTTCCATC 39798 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | || || || ||| ||||||||||||| || || || | ||||| || || Sbjct 39799 CTCAAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCAGGTGGAATCCCTTCCTTATC 39858 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||||||| || || | | | | | || | || | || ||| | ||||| | Sbjct 39859 TTGAATTTTTGCCTTAACATTGTCGATGGTGTC-CGAGCTCTCAACTTCAAGAGTAATAG 39917 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||| ||||| ||||| |||||||| Sbjct 39918 TTTTCCCGGTCAAGGTTTTCACAAAGATTTGCAT 39951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418726832119407