Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq119769 127 2e-24 seq156841 123 2e-23 >seq119769 Length=87979 Score = 127 bits (140), Expect = 2e-24 Identities = 479/743 (64%), Gaps = 15/743 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| ||| ||||| || | |||||| || ||||| || || || || ||| Sbjct 79182 GACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 79123 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTA 12961 | ||| ||| ||||| |||| || ||||| | || || | |||| || | | Sbjct 79122 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCT--GAGCATT-GTATAACTTATCA 79066 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | || || | |||||||| ||||| || || || ||||| | |||| ||||| Sbjct 79065 TAACCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCT 79006 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 | |||||||| | | ||||| || || | ||| | ||||||| || Sbjct 79005 CCATTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCC 78946 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA---TAGATGC 13138 || || || ||| || || |||| ||||| || | | | | || | || Sbjct 78945 ACAGCATCTGCAACAAT-TCCCTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTTAACAAA 78889 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || | | || ||| ||||||||||||||||| ||||| || || || | |||||| Sbjct 78888 CTATAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATCAACTCGTTC 78829 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || |||| || ||||| | ||| || ||||| | ||| ||||||||| || Sbjct 78828 GAGAAGGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTT 78769 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || || ||||| || ||||| || ||||| || | ||| | || || | | | Sbjct 78768 CCAGAGAAAAAAATACCTTCCACACAAGCAAATGCAACCAAACGCTCCGCAAATG---TT 78712 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | || || ||||| | ||||| || || || | | ||| ||| ||| | Sbjct 78711 TCGGAACCGTCGATCCAACGTAGTGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTC 78652 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || | |||| ||||| ||||||| | | ||| || |||| |||| | Sbjct 78651 TCAACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTAAGACTCTAGAAGC 78592 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | || ||||| || ||||| || ||||| ||||| |||||||| || || ||| | Sbjct 78591 AGACTGTACATCTCGGAATGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGC 78532 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 ||||| | || || ||||| || ||| | |||| |||||| ||| || ||| Sbjct 78531 GCCTCCGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCG 78472 Query 13559 TCACTAGCAGCaaaaaaaGCAAG 13581 || || || ||||| ||||| Sbjct 78471 TCTGAGGCGGCGAAAAAGGCAAG 78449 >seq156841 Length=49269 Score = 123 bits (136), Expect = 2e-23 Identities = 478/746 (64%), Gaps = 9/746 (1%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||||||||| || ||||| || | |||||| || ||||| || || || || ||| Sbjct 12598 GACATAACAGAAGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 12657 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | ||| ||| ||||| |||| || ||||| | || | || || | | | Sbjct 12658 TGTAAACTAATCAGCTCCATCCAATCAAACGGATTCTGCGCATTGTACAGCTTATCATAA 12717 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || || | |||||||| ||||| || || || ||||| | |||| ||||| | Sbjct 12718 CCCAAAGCATCCAACAATCTATCAGCCACGAATTCAATGTATTTGCTCATCAAATCTCCA 12777 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 |||||||| | | ||||| || || | ||| | ||||||| || || Sbjct 12778 TTCATTCCCACCAGCGCACAAGGCAGCGCGTCACACACAAACTCCCTTTCTATCTCCACA 12837 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA---TAGATGCTTA 13141 || || ||| || || |||| ||||| || | | | | || | || || Sbjct 12838 GCATCTGCAACAAT-TCCCTTAACTCGTTC-CTCA-GTAAGCTTCGTCCTTAACAAACTA 12894 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 | | || ||| ||||||||||||||||| ||||| || || |||| |||||| || Sbjct 12895 TAAAGCAAACAAGCAAAATCACAGTGCAAACCTTCGTCCCTTGAAATTAACTCGTTCGAG 12954 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| || ||||| | ||| || ||||| | ||| ||||||||| || || Sbjct 12955 AAAGTTAATCCAGGCATTAACCCCCGCTTTTTTAACCAGAATATAGCACAGAAGCTTCCA 13014 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || ||||| || ||||| || | ||| | || || | | | | Sbjct 13015 GAGAAAAAAATACCTTCCACACAAGCAAAGGCAACCAAACGCTCCGCAAATG---TTTCG 13071 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || || ||||| | |||||| || || || | | ||| ||| ||| | || Sbjct 13072 GAACCATCGATCCAACGTAGGGCCCACTTCGCCTTCTTCTCAACACAGGGGATAGTCTCA 13131 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 | |||| ||||| ||||||| | | ||| || || | |||| | | Sbjct 13132 ACTGCGCGGAATAATCTGCTTTTTTCGTCAGAGTCCTTGATGTACGACTCTAGAAGCAGA 13191 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 || ||||| || || || || ||||| ||||| |||||||| || || ||| | ||| Sbjct 13192 CTGTACATCTCGGAGTGGATGTTTTCAATCGCGATTTGGAAGCCGTAGAAAGCACGCGCC 13251 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | || || ||||| || ||| | |||| |||||| ||| || ||||| Sbjct 13252 TCGGCAACTTGGACTTCTTTCATGAACCTTCCGGCTAGGTTTTCTAAAACGATGCCGTCT 13311 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTG 13587 || || ||||| ||||| | ||| Sbjct 13312 GAGGCGGCGAAAAAGGCAAGGACGTG 13337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430098666144294