Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicotiana_20tabacum_20[refseq_20GCF_5F000715135.1_202014-05-29] 168,247 sequences; 3,643,471,356 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq130076 95.1 1e-14 seq53431 95.1 1e-14 seq42445 95.1 1e-14 seq19446 95.1 1e-14 seq14756 95.1 1e-14 seq162921 93.3 4e-14 seq99573 91.5 1e-13 seq64032 91.5 1e-13 seq121930 89.7 4e-13 seq49006 89.7 4e-13 seq27789 87.8 2e-12 seq162580 82.4 6e-11 >seq130076 Length=26012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| ||||| || |||||||||||||| | ||| | ||||| Sbjct 4140 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCGGCCATCCTC 4081 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 4080 CAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTG 4021 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 4020 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 3963 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 3962 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 3930 >seq53431 Length=29007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || ||| |||||| || |||||||||||||| | ||| | ||||| Sbjct 13263 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCTAGAGTTCGACCATCCTC 13204 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || ||| || |||| | |||||||| ||| || | | |||||||||| Sbjct 13203 GAGCTGTTTTCCGGCGAAAATGAGCCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 13144 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||| | | | || || || |||| || || ||| | || ||||| Sbjct 13143 GATCTTTGCCTTCACGTTGTCG--ATTGTGTCGGAGGATTCGACCTCAAGGGTGATGGTC 13086 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||| || ||||||||| Sbjct 13085 TTACCCGTCAGGGTTTTCACGAAGATCTGCATC 13053 >seq42445 Length=48945 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||| | | ||| | ||||| ||||| Sbjct 27135 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTG 27194 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || |||||||| ||| || | | |||||||||| ||| || Sbjct 27195 CTTACCTGCGAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 27254 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | ||||| ||| | || || || || || || Sbjct 27255 AGCCTTAACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGT 27314 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 27315 CAGGGTCTTCACGAATATCTGCATC 27339 >seq19446 Length=180869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||| | | ||| | ||||| ||||| Sbjct 172681 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGGCCATCCTCAAGCTG 172740 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| || |||| || |||||||| ||| || | | |||||||||| ||| || Sbjct 172741 CTTACCTGCGAAAATCAACCGCTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 172800 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| || | ||||| ||| | || || || || || || Sbjct 172801 AGCCTTAACATTGTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTCCCCGT 172860 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 172861 CAGGGTCTTCACGAATATCTGCATC 172885 >seq14756 Length=34955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || | ||||||||| || | ||| ||||| || Sbjct 26577 CACGAGATGAAGAGTCGACTCCTTCTGGAGGTTGTAATCGGCTAGGGTTCGGTCGTCTTC 26636 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || |||| | |||||||||||| || | | |||||| || Sbjct 26637 CAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 26696 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 26697 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 26753 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || |||||||| || ||||||||| Sbjct 26754 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 26787 >seq162921 Length=13166 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| ||||||| Sbjct 9119 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTC 9178 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | ||||||||| || || | | ||||||||| Sbjct 9179 GAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTG 9238 Query 48637 AATTTT--CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || || | || | || || || |||| ||| || ||| | || || ||| Sbjct 9239 GATCTTGGCTTCCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGTT 9296 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGA 48747 ||||| || || ||||| || || ||||||||| | ||| | || |||||| Sbjct 9297 TTACCCGTTAGGGTTTTGACGAAGATCTGCATCTTCGCTT--TGGAGGAAAGA 9347 >seq99573 Length=152460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| |||||||||||||| || | || | ||||| Sbjct 109116 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCGAGGGTACGGCCATCCTCG 109057 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || || | |||||| || || | | ||||| ||| | Sbjct 109056 AGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGA 108997 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | |||||||| | | ||| ||| | || || ||||| Sbjct 108996 ATTTTGGCCTTGACATTATCGATGGTATCAGAACTCTCGACCTCAAGGGTGATTGTTTTG 108937 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||| || || ||||||||| Sbjct 108936 CCGGTGAGGGTTTTGACGAAGATCTGCATC 108907 >seq64032 Length=36390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | ||| | ||||| |||||| Sbjct 10339 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCCTCGAGCTGC 10398 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | |||| || | ||||||||| || | | |||||||||| || || Sbjct 10399 TTACCAGCAAAAATCAACCTCTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTT 10458 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| ||| ||| | || ||||| || || || Sbjct 10459 GCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTC 10518 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | ||||||||||||||||||||| Sbjct 10519 AAAGTTTTCACAAAAATCTGCAT 10541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || |||||||| | | || | ||||| ||| |||||| ||||||||||| ||||| Sbjct 10087 CCACCGCGCAAACGGAGGACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGCA 10146 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | ||||| |||||||| || | | || | | ||||||||| || Sbjct 10147 AGAGTG-CGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 10205 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||||| | | || || |||| | ||| Sbjct 10206 GATTCCTTCCTTATCCTGAATCTTAGCCTTGACATTATCAATAGTGTCGGAACTCTCAAC 10265 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || || ||||| || || |||||||| ||||| Sbjct 10266 CTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCAT 10313 >seq121930 Length=130577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||| |||||| ||| || || ||||||||||||| | Sbjct 39497 CCTCCTCTCAAGCGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAG-C 39555 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | | | ||||| |||||||| || | |||| || | |||||| || || Sbjct 39556 AAGAGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGG 39615 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| || |||||| ||||| | | ||||| || | | ||| Sbjct 39616 GATCCCTTCCTTATCTTGAATTTTAGCCTTGACATTATCGATGGTGTCAGAACTCTCAAC 39675 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| || || || || |||||||| |||||||| Sbjct 39676 CTCAAGGGTGATAGTTTTCCCTGTCAGTGTCTTCACAAAGATCTGCAT 39723 >seq49006 Length=121539 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| || |||||| || ||||||||||| || | ||| |||| || Sbjct 73678 CACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCTTC 73737 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | |||||| || Sbjct 73738 AAGCTGCTTTCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATCCCTTCCTTATCTTG 73797 Query 48637 AATTTTCTGCTT---GATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || |||| || | || || || |||| ||| || ||| | || || || Sbjct 73798 GATCTT-GGCTTTCACATTGTCG--ATTGTGTCGGAAGATTCAACCTCAAGGGTGATTGT 73854 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || |||||||| || ||||||||| Sbjct 73855 TTTACCCGTTAGGGTTTTCACGAAGATCTGCATC 73888 >seq27789 Length=27798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | || || ||||| || || |||||| || ||||| || || || Sbjct 4821 CCTCCCCTCAAACGCAAGACCAAATGGAGAGTCGACTCCTTCTGGATGTTATAGTCCGC- 4879 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||||||||| || ||||| | | || ||||||||||| || || Sbjct 4880 AAGAGTC-CTGCCGTCCTCCAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGCG 4938 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | || |||||||| ||| || ||| |||| | | |||||||| | | ||| Sbjct 4939 GGATACCCTCCTTGTCTTGAATCTT-TGCTTTGACATTGTCAATGGTATCAGAACTCTCA 4997 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||| || || || || | ||| || |||||||||||||| Sbjct 4998 ACCTCCAAAGTTATTGTCTTCCCAGTCAAAGTCTTGACAAAAATCTGCAT 5047 >seq162580 Length=72030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| ||||| |||| || | || |||| |||||| || | | Sbjct 31060 CTCCTTCTGGATGTTATAATCCGCCAGAGTTCTTCCATCTTCCAACTGCTTCCCAGCAAA 31119 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | | |||||||||| || | || ||||||||| ||| || ||| | | Sbjct 31120 AATCAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCTTCACATT 31179 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || ||||||| | |||| ||| | || |||||||| || || | || ||||| Sbjct 31180 GTCAATAGTATCGGAACTCTCCACCTCCAAAGTGATGGTTTTCCCTGTCAACGTCTTCAC 31239 Query 48715 AAAAATCTGCATC 48727 ||||||||||||| Sbjct 31240 AAAAATCTGCATC 31252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420387420070247